Variant report

Variant	rs1196359
Chromosome Location	chr1:151581871-151581872
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:151580809..151584127-chr1:151586626..151590699,5	MCF-7	breast:
2	chr1:151534012..151536307-chr1:151581033..151583882,2	MCF-7	breast:
3	chr1:151549087..151552295-chr1:151579604..151582437,3	MCF-7	breast:
4	chr1:151509848..151514263-chr1:151581077..151585541,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000232536	Chromatin interaction
ENSG00000143367	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10888422	0.82[EUR][1000 genomes]
rs1196361	0.92[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs1196362	0.95[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs1539492	0.90[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs1781415	0.90[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs2337363	0.82[EUR][1000 genomes]
rs4394658	0.90[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs4970920	0.91[EUR][1000 genomes]
rs6660238	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs6683478	0.87[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs6701819	0.82[EUR][1000 genomes]
rs6702889	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997511	chr1:151491765-151595902	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151579800-151583600	Weak transcription	Stomach Mucosa	stomach
2	chr1:151579800-151583800	Weak transcription	Pancreas	Pancrea
3	chr1:151580000-151582600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr1:151580200-151584000	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr1:151580800-151583600	Weak transcription	NHLF	lung
6	chr1:151581000-151583600	Weak transcription	HSMM	muscle
7	chr1:151581000-151583800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr1:151581000-151583800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr1:151581000-151583800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr1:151581000-151583800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr1:151581000-151584200	Weak transcription	Fetal Stomach	stomach
12	chr1:151581200-151582400	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr1:151581200-151582600	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr1:151581200-151582800	Weak transcription	Fetal Intestine Small	intestine
15	chr1:151581200-151583200	Weak transcription	HepG2	liver
16	chr1:151581200-151583400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr1:151581200-151583400	Weak transcription	Hela-S3	cervix
18	chr1:151581200-151583600	Weak transcription	Adipose Nuclei	Adipose
19	chr1:151581200-151583600	Weak transcription	NHEK	skin
20	chr1:151581200-151583800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr1:151581200-151583800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr1:151581200-151583800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr1:151581200-151583800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr1:151581200-151583800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr1:151581200-151583800	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr1:151581200-151583800	Weak transcription	Colon Smooth Muscle	Colon
27	chr1:151581200-151583800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr1:151581200-151583800	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr1:151581200-151583800	Weak transcription	Rectal Smooth Muscle	rectum
30	chr1:151581200-151583800	Weak transcription	Stomach Smooth Muscle	stomach
31	chr1:151581200-151583800	Weak transcription	HSMMtube	muscle
32	chr1:151581200-151583800	Weak transcription	K562	blood
33	chr1:151581200-151583800	Weak transcription	NH-A	brain
34	chr1:151581200-151584200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr1:151581400-151582600	Weak transcription	Placenta	Placenta
36	chr1:151581400-151583200	Weak transcription	Fetal Intestine Large	intestine
37	chr1:151581400-151583400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr1:151581400-151583600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
39	chr1:151581400-151583600	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr1:151581400-151583600	Weak transcription	A549	lung
41	chr1:151581400-151583600	Weak transcription	HMEC	breast
42	chr1:151581400-151583600	Weak transcription	NHDF-Ad	bronchial
43	chr1:151581400-151583800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr1:151581400-151583800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr1:151581400-151583800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr1:151581400-151583800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr1:151581400-151583800	Weak transcription	Duodenum Mucosa	Duodenum
48	chr1:151581400-151583800	Weak transcription	Fetal Muscle Leg	muscle
49	chr1:151581400-151583800	Weak transcription	HUVEC	blood vessel
50	chr1:151581400-151583800	Weak transcription	Osteobl	bone

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