Variant report

Variant	rs1196363
Chromosome Location	chr1:151574887-151574888
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	1:151516085-151535167..1:151565791-151575769	H1-hESC	embryonic stem cell:	embryo
2	1:151427826-151434310..1:151565791-151575769	K562	blood:
3	1:151333184-151350267..1:151565791-151575769	GM12878	blood:
4	1:151565791-151575769..1:151618750-151636526	K562	blood:
5	chr1:151573478..151575634-chr1:151589093..151591397,2	K562	blood:
6	1:151254384-151268403..1:151565791-151575769	K562	blood:
7	chr1:151574802..151576461-chr1:151576618..151578193,2	MCF-7	breast:
8	1:151496437-151509688..1:151565791-151575769	K562	blood:
9	1:151411623-151426875..1:151565791-151575769	Hela-S3	cervix:

No data

No data

No data

Variant related genes	Relation type
ENSG00000143416	Chromatin interaction
ENSG00000223861	Chromatin interaction
ENSG00000232671	Chromatin interaction
ENSG00000207606	Chromatin interaction
ENSG00000143393	Chromatin interaction
ENSG00000143376	Chromatin interaction
ENSG00000143367	Chromatin interaction
ENSG00000143442	Chromatin interaction
ENSG00000252840	Chromatin interaction
ENSG00000143375	Chromatin interaction
ENSG00000143373	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11204891	1.00[EUR][1000 genomes]
rs1196463	0.89[ASW][hapmap];0.81[MKK][hapmap]
rs2997072	0.89[ASW][hapmap];0.81[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997511	chr1:151491765-151595902	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151555400-151580800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr1:151570200-151578600	Weak transcription	A549	lung
3	chr1:151570400-151578600	Weak transcription	Hela-S3	cervix
4	chr1:151574200-151575200	Enhancers	HepG2	liver
5	chr1:151574200-151575400	Enhancers	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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