Variant report

Variant	rs11963835
Chromosome Location	chr6:106908600-106908601
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:106904809..106907858-chr6:106908070..106911285,3	K562	blood:
2	chr6:106898519..106901120-chr6:106908311..106911267,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1801391	1.00[AMR][1000 genomes]
rs56787411	1.00[AMR][1000 genomes]
rs56914763	1.00[AMR][1000 genomes]
rs57227217	1.00[AMR][1000 genomes]
rs59766351	1.00[AMR][1000 genomes]
rs61113468	1.00[AMR][1000 genomes]
rs6911770	1.00[AMR][1000 genomes]
rs6913393	1.00[AMR][1000 genomes]
rs6916724	1.00[AMR][1000 genomes]
rs6920562	1.00[AMR][1000 genomes]
rs6930489	1.00[AMR][1000 genomes]
rs6933695	1.00[AMR][1000 genomes]
rs6934549	1.00[AMR][1000 genomes]
rs73761864	1.00[AMR][1000 genomes]
rs7741144	1.00[AMR][1000 genomes]
rs7770833	1.00[AMR][1000 genomes]
rs8910	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932155	chr6:106281728-107030467	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv1018270	chr6:106531658-106908606	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv538399	chr6:106531658-106908606	Flanking Active TSS Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv532047	chr6:106591482-107143252	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv1020047	chr6:106597828-106912047	Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
6	nsv870375	chr6:106696090-107047892	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
7	nsv1025510	chr6:106791080-106982400	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	nsv538404	chr6:106791080-106982400	Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:106900800-106910200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr6:106901200-106921200	Weak transcription	NHEK	skin
3	chr6:106902000-106917000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr6:106902600-106916600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr6:106902800-106908600	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr6:106902800-106918600	Weak transcription	HMEC	breast
7	chr6:106906800-106909600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr6:106906800-106917000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:106906800-106917800	Weak transcription	Esophagus	oesophagus
10	chr6:106907000-106908600	Weak transcription	Duodenum Mucosa	Duodenum
11	chr6:106907000-106908600	Weak transcription	HepG2	liver
12	chr6:106907000-106908800	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr6:106907000-106913600	Weak transcription	Fetal Intestine Small	intestine
14	chr6:106907200-106917800	Weak transcription	Fetal Intestine Large	intestine
15	chr6:106908200-106909200	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr6:106908200-106909600	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr6:106908200-106910000	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr6:106908400-106908600	Bivalent Enhancer	Small Intestine	intestine
19	chr6:106908400-106908800	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr6:106908400-106909400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
21	chr6:106908400-106909600	Enhancers	H1 Cell Line	embryonic stem cell
22	chr6:106908400-106909600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
23	chr6:106908400-106909800	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr6:106908400-106909800	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr6:106908600-106908800	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr6:106908600-106908800	Enhancers	Duodenum Mucosa	Duodenum
27	chr6:106908600-106909400	Enhancers	Cortex derived primary cultured neurospheres	brain
28	chr6:106908600-106909800	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr6:106908600-106912200	Enhancers	HepG2	liver

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