Variant report

Variant	rs11964048
Chromosome Location	chr6:35454505-35454506
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:35151150..35153092-chr6:35452515..35454957,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs16876156	0.82[ASN][1000 genomes]
rs45532239	0.82[ASN][1000 genomes]
rs45571538	0.82[ASN][1000 genomes]
rs45600543	0.82[ASN][1000 genomes]
rs73415611	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528351	chr6:35377922-35465786	Flanking Active TSS Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	69 gene(s)	inside rSNPs	diseases
2	nsv462908	chr6:35378778-35457396	Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv602910	chr6:35378778-35457396	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv519370	chr6:35378778-35537406	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	72 gene(s)	inside rSNPs	diseases
5	nsv984463	chr6:35432948-35477634	Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35438000-35455800	Weak transcription	Brain Angular Gyrus	brain
2	chr6:35438200-35458000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr6:35440200-35457200	Weak transcription	Psoas Muscle	Psoas
4	chr6:35440400-35455600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr6:35440600-35455800	Weak transcription	Primary B cells from cord blood	blood
6	chr6:35441800-35458200	Weak transcription	Brain Substantia Nigra	brain
7	chr6:35443200-35458000	Weak transcription	Brain Anterior Caudate	brain
8	chr6:35443600-35462000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr6:35443800-35455600	Weak transcription	Fetal Brain Female	brain
10	chr6:35444200-35455800	Weak transcription	Thymus	Thymus
11	chr6:35444200-35457800	Weak transcription	Brain Germinal Matrix	brain
12	chr6:35450800-35454600	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr6:35451800-35455000	Enhancers	Fetal Thymus	thymus
14	chr6:35452000-35454800	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr6:35452000-35455400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr6:35452200-35458200	Enhancers	Fetal Heart	heart
17	chr6:35452400-35454800	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr6:35452400-35454800	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr6:35452400-35454800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
20	chr6:35452400-35460000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr6:35452400-35461400	Enhancers	NH-A	brain
22	chr6:35452600-35454600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
23	chr6:35452600-35454600	Genic enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr6:35452600-35454600	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr6:35452600-35454800	Genic enhancers	NHLF	lung
26	chr6:35452600-35455000	Enhancers	NHDF-Ad	bronchial
27	chr6:35452600-35455200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr6:35452600-35456400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr6:35452800-35454600	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
30	chr6:35452800-35454800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
31	chr6:35452800-35454800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
32	chr6:35452800-35455000	Enhancers	Aorta	Aorta
33	chr6:35452800-35455200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr6:35453000-35454600	Enhancers	Left Ventricle	heart
35	chr6:35453000-35454600	Enhancers	Ovary	ovary
36	chr6:35453000-35454600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
37	chr6:35453000-35454800	Flanking Active TSS	H1 Cell Line	embryonic stem cell
38	chr6:35453000-35454800	Flanking Active TSS	Colonic Mucosa	Colon
39	chr6:35453000-35454800	Flanking Active TSS	HMEC	breast
40	chr6:35453200-35454600	Active TSS	H9 Cell Line	embryonic stem cell
41	chr6:35453200-35454600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr6:35453200-35454800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr6:35453200-35455000	Enhancers	Gastric	stomach
44	chr6:35453200-35455400	Weak transcription	Primary neutrophils fromperipheralblood	blood
45	chr6:35453400-35454600	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr6:35453400-35454600	Strong transcription	Cortex derived primary cultured neurospheres	brain
47	chr6:35453400-35454600	Flanking Active TSS	Esophagus	oesophagus
48	chr6:35453400-35454800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
49	chr6:35453400-35454800	Weak transcription	Fetal Kidney	kidney
50	chr6:35453400-35455000	Flanking Active TSS	Stomach Smooth Muscle	stomach

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