Variant report

Variant	rs11964294
Chromosome Location	chr6:20239344-20239345
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs71560119	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027355	chr6:20207893-20261048	Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1027220	chr6:20213667-20258103	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv1028657	chr6:20215081-20258103	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv883466	chr6:20231272-20265965	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:20236400-20239800	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr6:20237800-20239600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:20238400-20239400	Enhancers	H9 Cell Line	embryonic stem cell
4	chr6:20238600-20239600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:20238600-20242800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:20238800-20241800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:20238800-20246400	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr6:20239000-20239400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr6:20239000-20239600	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr6:20239000-20239800	Active TSS	HUES6 Cell Line	embryonic stem cell
11	chr6:20239000-20239800	Active TSS	iPS-15b Cell Line	embryonic stem cell
12	chr6:20239000-20241200	Weak transcription	Fetal Intestine Small	intestine
13	chr6:20239000-20241600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr6:20239000-20245400	Weak transcription	Stomach Mucosa	stomach
15	chr6:20239200-20242600	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr6:20239200-20242800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr6:20239200-20245800	Weak transcription	Rectal Mucosa Donor 29	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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