Variant report

Variant	rs11964715
Chromosome Location	chr6:34166678-34166679
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:34164913..34168337-chr6:34392237..34394260,3	MCF-7	breast:
2	chr6:34156581..34160896-chr6:34162763..34169787,10	K562	blood:
3	chr6:34161256..34167016-chr6:34189422..34193988,6	K562	blood:
4	chr6:34160739..34183165-chr6:34199874..34216980,124	K562	blood:
5	chr6:34164779..34167229-chr6:34380902..34383659,2	MCF-7	breast:
6	chr6:34166525..34169280-chr6:34173395..34175146,2	MCF-7	breast:
7	chr6:34166357..34168455-chr6:34173499..34175129,2	K562	blood:
8	chr6:34164046..34167260-chr6:34381691..34384552,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000124614	Chromatin interaction
ENSG00000137309	Chromatin interaction
ENSG00000270800	Chromatin interaction
ENSG00000271231	Chromatin interaction
ENSG00000186577	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs60260471	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6918371	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6934434	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462900	chr6:33932442-34195011	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv602843	chr6:33932442-34195011	Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv432881	chr6:34026522-34213822	Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
4	nsv462902	chr6:34056726-34195011	Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv602862	chr6:34056726-34195011	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv885781	chr6:34110257-34247661	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
7	nsv462903	chr6:34110257-34263743	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
8	nsv602863	chr6:34110257-34263743	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
9	esv1816380	chr6:34110880-34206718	Transcr. at gene 5' and 3' Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34164600-34168200	Weak transcription	Hela-S3	cervix
2	chr6:34164600-34168400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:34164600-34170000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr6:34164800-34168200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr6:34164800-34168200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:34164800-34168200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:34164800-34168200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr6:34164800-34168200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr6:34164800-34168200	Weak transcription	Pancreas	Pancrea
10	chr6:34164800-34168400	Weak transcription	Gastric	stomach
11	chr6:34164800-34168400	Weak transcription	NHDF-Ad	bronchial
12	chr6:34164800-34169600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr6:34164800-34169600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr6:34164800-34169800	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr6:34164800-34169800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr6:34164800-34169800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr6:34164800-34169800	Weak transcription	Placenta	Placenta
18	chr6:34164800-34170000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr6:34164800-34170000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr6:34164800-34172200	Weak transcription	Right Atrium	heart
21	chr6:34165800-34169800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr6:34166000-34168200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr6:34166200-34168200	Weak transcription	K562	blood
24	chr6:34166400-34168200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links