Variant report

Variant	rs11965240
Chromosome Location	chr6:142951478-142951479
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10484589	0.86[AFR][1000 genomes]
rs17071903	0.84[AFR][1000 genomes]
rs17071909	0.86[AFR][1000 genomes]
rs1876844	0.81[AFR][1000 genomes]
rs2136518	0.90[AFR][1000 genomes]
rs2136519	0.90[AFR][1000 genomes]
rs2175164	0.90[AFR][1000 genomes]
rs36031960	0.86[AFR][1000 genomes]
rs55671842	0.86[AFR][1000 genomes]
rs55747254	0.86[AFR][1000 genomes]
rs55787572	0.90[AFR][1000 genomes]
rs56017506	0.86[AFR][1000 genomes]
rs56043044	0.86[AFR][1000 genomes]
rs56049518	0.90[AFR][1000 genomes]
rs56055844	0.86[AFR][1000 genomes]
rs56135811	0.81[AFR][1000 genomes]
rs56196468	0.86[AFR][1000 genomes]
rs56228013	0.86[AFR][1000 genomes]
rs56267414	0.86[AFR][1000 genomes]
rs56363136	0.86[AFR][1000 genomes]
rs72998335	0.86[AFR][1000 genomes]
rs72998337	0.86[AFR][1000 genomes]
rs72998353	0.86[AFR][1000 genomes]
rs72998356	0.86[AFR][1000 genomes]
rs72998364	0.86[AFR][1000 genomes]
rs72998369	0.81[AFR][1000 genomes]
rs72998371	0.81[AFR][1000 genomes]
rs72998375	0.81[AFR][1000 genomes]
rs72998382	0.81[AFR][1000 genomes]
rs72998384	0.86[AFR][1000 genomes]
rs72998386	0.86[AFR][1000 genomes]
rs72998388	0.86[AFR][1000 genomes]
rs72998391	0.90[AFR][1000 genomes]
rs72998393	0.90[AFR][1000 genomes]
rs72998399	0.90[AFR][1000 genomes]
rs72998400	0.90[AFR][1000 genomes]
rs7750490	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7750735	1.00[AMR][1000 genomes]
rs7772506	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv830827	chr6:142840734-143015005	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142946800-142956000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:142949000-142953000	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr6:142949400-142952600	Weak transcription	Primary T helper cells PMA-I stimulated	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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