Variant report

Variant	rs11965772
Chromosome Location	chr6:24185891-24185892
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10806984	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1087291	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1087293	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1277191	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13191535	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13207282	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2799372	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4712805	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs793850	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv601146	chr6:24166233-24215665	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
3	esv3421801	chr6:24185881-24185977	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24153800-24200800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:24172800-24194800	Weak transcription	Fetal Intestine Large	intestine
3	chr6:24177800-24198400	Weak transcription	A549	lung
4	chr6:24181400-24189600	Strong transcription	HepG2	liver
5	chr6:24184200-24195200	Weak transcription	Pancreas	Pancrea
6	chr6:24184600-24195000	Weak transcription	Fetal Intestine Small	intestine
7	chr6:24185800-24186600	Strong transcription	Fetal Kidney	kidney

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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