Variant report

Variant	rs11966126
Chromosome Location	chr6:24322287-24322288
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:24316198..24318922-chr6:24321457..24323434,2	MCF-7	breast:
2	chr6:24312577..24316019-chr6:24320665..24323632,3	MCF-7	breast:
3	chr6:24320309..24323217-chr6:24354442..24356031,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11544636	1.00[CHB][hapmap]
rs17374923	1.00[CHB][hapmap]
rs1770464	1.00[ASN][1000 genomes]
rs34584835	1.00[ASN][1000 genomes]
rs34643396	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59296932	1.00[ASN][1000 genomes]
rs62400442	0.97[AFR][1000 genomes]
rs7740390	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7763413	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv601147	chr6:24322287-24326144	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv601148	chr6:24322287-24326596	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv601149	chr6:24322287-24327501	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11966126	HIST1H1E	cis	parietal	SCAN
rs11966126	ZNF165	cis	cerebellum	SCAN

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24316400-24326800	Weak transcription	Pancreas	Pancrea
2	chr6:24316600-24324800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:24319600-24323600	Enhancers	HepG2	liver
4	chr6:24321400-24322400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
5	chr6:24321600-24322400	Enhancers	Fetal Heart	heart
6	chr6:24321600-24322600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
7	chr6:24321600-24322600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
8	chr6:24321800-24323800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr6:24322000-24322400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
10	chr6:24322000-24322400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
11	chr6:24322000-24322400	Active TSS	iPS-20b Cell Line	embryonic stem cell
12	chr6:24322000-24324000	Weak transcription	HSMMtube	muscle
13	chr6:24322200-24322400	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
14	chr6:24322200-24322400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr6:24322200-24322400	Flanking Active TSS	A549	lung
16	chr6:24322200-24322600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
17	chr6:24322200-24323200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr6:24322200-24323200	Weak transcription	NH-A	brain
19	chr6:24322200-24324000	Weak transcription	Fetal Intestine Small	intestine
20	chr6:24322200-24324200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr6:24322200-24324800	Enhancers	Fetal Kidney	kidney

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