Variant report

Variant	rs11966158
Chromosome Location	chr6:139919426-139919427
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:139918023..139920121-chr6:139924090..139925630,2	K562	blood:
2	chr6:139768879..139771871-chr6:139917556..139920182,2	K562	blood:
3	chr6:139693711..139697015-chr6:139916879..139919685,3	K562	blood:
4	chr6:139695495..139698126-chr6:139917081..139919685,3	K562	blood:
5	chr6:139916889..139920627-chr6:139922127..139924078,3	K562	blood:

Variant related genes	Relation type
ENSG00000164442	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11961450	1.00[AMR][1000 genomes]
rs11962478	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11962747	1.00[AMR][1000 genomes]
rs11970015	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6899761	1.00[AMR][1000 genomes]
rs7741203	1.00[AMR][1000 genomes]
rs9495573	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139907200-139919800	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr6:139907600-139925200	Weak transcription	Aorta	Aorta
3	chr6:139908800-139920600	Enhancers	Fetal Intestine Small	intestine
4	chr6:139909400-139925200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:139909600-139923400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:139913000-139928600	Weak transcription	Ovary	ovary
7	chr6:139914400-139925200	Weak transcription	Spleen	Spleen
8	chr6:139915000-139921000	Enhancers	Colon Smooth Muscle	Colon
9	chr6:139915600-139919800	Enhancers	Stomach Mucosa	stomach
10	chr6:139915600-139920200	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr6:139915600-139920800	Enhancers	Fetal Intestine Large	intestine
12	chr6:139916000-139921000	Enhancers	NHLF	lung
13	chr6:139916400-139922200	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr6:139916800-139924000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr6:139917000-139922200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr6:139917400-139919600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr6:139917600-139920200	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr6:139917600-139920200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr6:139917600-139920200	Enhancers	NH-A	brain
20	chr6:139917600-139920800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr6:139917800-139919800	Enhancers	Duodenum Mucosa	Duodenum
22	chr6:139917800-139919800	Enhancers	HMEC	breast
23	chr6:139917800-139920200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr6:139918000-139919600	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr6:139918000-139919600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr6:139918200-139919800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr6:139918200-139919800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr6:139918200-139919800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr6:139918200-139921000	Enhancers	Fetal Stomach	stomach
30	chr6:139918400-139919600	Enhancers	Primary neutrophils fromperipheralblood	blood
31	chr6:139918400-139919600	Enhancers	Pancreatic Islets	Pancreatic Islet
32	chr6:139918400-139919600	Enhancers	Placenta	Placenta
33	chr6:139918400-139919600	Enhancers	Skeletal Muscle Male	skeletal muscle
34	chr6:139918400-139919600	Enhancers	HSMMtube	muscle
35	chr6:139918400-139919600	Enhancers	Monocytes-CD14+_RO01746	blood
36	chr6:139918400-139919800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr6:139918400-139919800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr6:139918400-139919800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr6:139918400-139919800	Enhancers	Liver	Liver
40	chr6:139918400-139919800	Enhancers	Brain Germinal Matrix	brain
41	chr6:139918400-139919800	Enhancers	Fetal Lung	lung
42	chr6:139918400-139919800	Enhancers	NHEK	skin
43	chr6:139918400-139920200	Enhancers	Brain Angular Gyrus	brain
44	chr6:139918400-139920400	Enhancers	Fetal Brain Male	brain
45	chr6:139918400-139920600	Enhancers	Fetal Muscle Leg	muscle
46	chr6:139918600-139919600	Enhancers	Brain Anterior Caudate	brain
47	chr6:139918600-139919600	Enhancers	Brain Cingulate Gyrus	brain
48	chr6:139918600-139919600	Enhancers	Brain Hippocampus Middle	brain
49	chr6:139918600-139919800	Enhancers	Primary monocytes fromperipheralblood	blood
50	chr6:139918600-139922000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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