Variant report

Variant	rs11966350
Chromosome Location	chr6:161421405-161421406
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:161421006..161425101-chr6:161625177..161629259,4	K562	blood:
2	chr6:161421302..161424014-chr6:161424627..161426475,2	K562	blood:
3	chr6:161411515..161414164-chr6:161420734..161423757,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000085511	Chromatin interaction
ENSG00000272841	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1000277	1.00[YRI][hapmap]
rs10945711	1.00[YRI][hapmap]
rs11962887	0.97[AFR][1000 genomes]
rs11963087	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11964419	1.00[YRI][hapmap]
rs11968786	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12110854	1.00[YRI][hapmap]
rs12111228	0.97[AFR][1000 genomes]
rs41330446	1.00[YRI][hapmap]
rs4562116	1.00[AMR][1000 genomes]
rs6926524	0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422347	chr6:161211171-161442377	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1030045	chr6:161359075-161562255	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv886817	chr6:161371621-161846654	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	esv3381361	chr6:161373617-161864101	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv1023982	chr6:161382188-161549831	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161413800-161432000	Weak transcription	Aorta	Aorta
2	chr6:161413800-161433000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:161414000-161422400	Weak transcription	Fetal Muscle Leg	muscle
4	chr6:161414000-161430800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:161414000-161432000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr6:161414200-161422400	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr6:161414200-161422400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr6:161414200-161422400	Weak transcription	A549	lung
9	chr6:161414200-161422600	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr6:161414200-161422600	Weak transcription	Fetal Kidney	kidney
11	chr6:161414200-161422600	Weak transcription	Stomach Mucosa	stomach
12	chr6:161414200-161431600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr6:161414200-161431600	Weak transcription	Rectal Smooth Muscle	rectum
14	chr6:161414200-161458200	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr6:161414400-161422400	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr6:161414400-161422400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr6:161414400-161469600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr6:161414600-161422600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr6:161414600-161422800	Weak transcription	Fetal Heart	heart
20	chr6:161414600-161432800	Weak transcription	Fetal Stomach	stomach
21	chr6:161414600-161442600	Weak transcription	Primary B cells from cord blood	blood
22	chr6:161414600-161457400	Weak transcription	Primary hematopoietic stem cells	blood
23	chr6:161414800-161422400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr6:161414800-161422600	Weak transcription	Hela-S3	cervix
25	chr6:161415400-161422400	Weak transcription	Primary B cells from peripheral blood	blood
26	chr6:161415600-161422600	Weak transcription	Brain Cingulate Gyrus	brain
27	chr6:161415600-161427800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr6:161415600-161450000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr6:161416600-161422600	Weak transcription	Fetal Intestine Large	intestine
30	chr6:161416600-161475200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr6:161416800-161422600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr6:161416800-161436200	Weak transcription	Fetal Intestine Small	intestine
33	chr6:161417400-161422400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
34	chr6:161417400-161422400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr6:161417400-161422400	Weak transcription	Adipose Nuclei	Adipose
36	chr6:161417400-161422400	Weak transcription	Brain Substantia Nigra	brain
37	chr6:161417400-161449000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr6:161417600-161422400	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr6:161417600-161430200	Weak transcription	Primary T cells fromperipheralblood	blood
40	chr6:161417800-161422400	Weak transcription	Primary neutrophils fromperipheralblood	blood
41	chr6:161417800-161422400	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr6:161417800-161422400	Weak transcription	Brain Germinal Matrix	brain
43	chr6:161417800-161422400	Weak transcription	Monocytes-CD14+_RO01746	blood
44	chr6:161417800-161422600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
45	chr6:161417800-161422600	Weak transcription	Gastric	stomach
46	chr6:161417800-161422600	Weak transcription	HSMM	muscle
47	chr6:161417800-161433600	Weak transcription	Primary T helper cells fromperipheralblood	blood
48	chr6:161418000-161421600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr6:161418000-161422000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr6:161418000-161422400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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