Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:75459206..75461737-chr6:75912359..75915403,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000111799	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1105160	0.94[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs11962654	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16885523	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1932833	0.86[ASN][1000 genomes]
rs2105121	0.92[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs34565805	0.86[ASN][1000 genomes]
rs4112823	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4422579	0.93[ASN][1000 genomes]
rs58952845	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs60006441	0.86[ASN][1000 genomes]
rs6910395	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs73464046	0.86[ASN][1000 genomes]
rs73466041	0.86[ASN][1000 genomes]
rs7752050	0.94[AMR][1000 genomes]
rs869064	0.91[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs9447232	0.93[ASN][1000 genomes]
rs9447233	0.80[ASN][1000 genomes]
rs9447259	0.86[ASN][1000 genomes]
rs9447269	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs945817	0.94[AFR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520746	chr6:75211546-75691814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv917283	chr6:75234428-75641440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv830695	chr6:75409656-75583115	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv603759	chr6:75432861-75461657	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv886169	chr6:75432861-75610722	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75458400-75460800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr6:75458600-75460600	Enhancers	HMEC	breast
3	chr6:75458600-75460800	Enhancers	Colon Smooth Muscle	Colon
4	chr6:75459000-75460000	Enhancers	HSMMtube	muscle
5	chr6:75459000-75460400	Enhancers	Osteobl	bone
6	chr6:75459000-75460600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:75459000-75460600	Enhancers	Muscle Satellite Cultured Cells	--
8	chr6:75459000-75461000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:75459200-75460000	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr6:75459200-75460600	Enhancers	HUVEC	blood vessel
11	chr6:75459400-75464600	Weak transcription	Pancreas	Pancrea
12	chr6:75459600-75460000	Weak transcription	Gastric	stomach
13	chr6:75459600-75460200	Enhancers	Hela-S3	cervix
14	chr6:75459600-75460400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr6:75459600-75460600	Weak transcription	Rectal Smooth Muscle	rectum
16	chr6:75459600-75460600	Enhancers	NHEK	skin
17	chr6:75459800-75460000	Weak transcription	NH-A	brain
18	chr6:75459800-75460400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr6:75459800-75465400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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