Variant report

Variant	rs11967206
Chromosome Location	chr6:31732679-31732680
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:31647104..31649460-chr6:31731403..31733722,2	MCF-7	breast:
2	chr6:31707659..31709332-chr6:31732393..31734273,2	MCF-7	breast:
3	chr6:31513724..31516419-chr6:31731123..31734011,2	K562	blood:
4	chr6:31730833..31734412-chr6:31734807..31737911,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000204498	Chromatin interaction
ENSG00000213760	Chromatin interaction
ENSG00000204396	Chromatin interaction
ENSG00000204410	Chromatin interaction
ENSG00000254870	Chromatin interaction
ENSG00000204428	Chromatin interaction
ENSG00000255152	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11964779	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11965323	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11966331	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17207552	1.00[ASN][1000 genomes]
rs2254083	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2295667	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28399971	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34453162	1.00[EUR][1000 genomes]
rs34467149	1.00[ASN][1000 genomes]
rs4713482	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4947252	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4947329	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4947330	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56662332	0.83[AFR][1000 genomes]
rs59002496	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59114240	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60149397	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60559550	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60900316	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73398259	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7382084	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv601609	chr6:31280101-31799786	Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Enhancers Genic enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	332 gene(s)	inside rSNPs	diseases
2	nsv601610	chr6:31280101-31960770	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	370 gene(s)	inside rSNPs	diseases
3	nsv601628	chr6:31280327-31990098	Weak transcription Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
4	nsv601629	chr6:31280327-31996185	Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
5	nsv601630	chr6:31280327-32011317	Genic enhancers Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	378 gene(s)	inside rSNPs	diseases
6	nsv601631	chr6:31280327-32017540	Genic enhancers Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	378 gene(s)	inside rSNPs	diseases
7	nsv1023939	chr6:31325961-32026747	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	372 gene(s)	inside rSNPs	diseases
8	nsv538188	chr6:31325961-32026747	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	372 gene(s)	inside rSNPs	diseases
9	nsv1021747	chr6:31386219-31907266	Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	330 gene(s)	inside rSNPs	diseases
10	nsv884418	chr6:31525448-31741078	Active TSS Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	206 gene(s)	inside rSNPs	diseases
11	nsv1033154	chr6:31550614-32009410	Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	326 gene(s)	inside rSNPs	diseases
12	nsv1017945	chr6:31609641-32481240	Genic enhancers Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	322 gene(s)	inside rSNPs	diseases
13	esv3428142	chr6:31615800-31881809	Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	257 gene(s)	inside rSNPs	diseases
14	esv2763547	chr6:31715882-31738478	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
15	nsv884426	chr6:31728102-31800868	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	139 gene(s)	inside rSNPs	diseases
16	nsv884427	chr6:31728102-31802465	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	152 gene(s)	inside rSNPs	diseases
17	nsv884428	chr6:31728102-31870326	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	162 gene(s)	inside rSNPs	diseases
18	nsv884429	chr6:31730356-31837066	Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	155 gene(s)	inside rSNPs	diseases
19	nsv884430	chr6:31731881-31800631	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	139 gene(s)	inside rSNPs	diseases
20	nsv884431	chr6:31732679-31761386	Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:31708200-31733800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:31708600-31734400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr6:31708800-31737400	Weak transcription	Liver	Liver
4	chr6:31709000-31738200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr6:31709200-31737400	Weak transcription	Primary B cells from peripheral blood	blood
6	chr6:31709600-31737400	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr6:31715200-31734000	Weak transcription	Esophagus	oesophagus
8	chr6:31715400-31733800	Weak transcription	Ovary	ovary
9	chr6:31715400-31733800	Weak transcription	Stomach Smooth Muscle	stomach
10	chr6:31715600-31733800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr6:31716600-31744000	Weak transcription	GM12878-XiMat	blood
12	chr6:31724600-31733000	Weak transcription	Rectal Smooth Muscle	rectum
13	chr6:31725400-31733400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
14	chr6:31725800-31737800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr6:31727600-31734000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr6:31727600-31738400	Weak transcription	Primary T cells from cord blood	blood
17	chr6:31728000-31732800	Strong transcription	Fetal Thymus	thymus
18	chr6:31728200-31734000	Weak transcription	Colon Smooth Muscle	Colon
19	chr6:31729000-31734000	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr6:31729000-31736800	Weak transcription	Primary B cells from cord blood	blood
21	chr6:31729200-31742800	Weak transcription	A549	lung
22	chr6:31729800-31734000	Weak transcription	Fetal Lung	lung
23	chr6:31729800-31735200	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr6:31729800-31737400	Weak transcription	Colonic Mucosa	Colon
25	chr6:31730200-31734000	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr6:31730400-31733800	Weak transcription	Brain Germinal Matrix	brain
27	chr6:31730400-31734000	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr6:31730600-31733800	Weak transcription	Fetal Brain Female	brain
29	chr6:31730600-31736200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr6:31730600-31736800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr6:31730800-31733600	Genic enhancers	Fetal Intestine Small	intestine
32	chr6:31731000-31733800	Weak transcription	Primary neutrophils fromperipheralblood	blood
33	chr6:31731400-31732800	Enhancers	Fetal Intestine Large	intestine
34	chr6:31731400-31733200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr6:31731400-31734000	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr6:31731400-31734200	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr6:31731400-31735400	Weak transcription	Monocytes-CD14+_RO01746	blood
38	chr6:31731400-31744400	Weak transcription	Left Ventricle	heart
39	chr6:31731600-31733600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr6:31731600-31733600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr6:31731600-31733800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr6:31731600-31733800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr6:31731600-31733800	Weak transcription	Gastric	stomach
44	chr6:31731600-31734000	Weak transcription	NH-A	brain
45	chr6:31731600-31734000	Weak transcription	Osteobl	bone
46	chr6:31731600-31734200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr6:31731600-31734200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr6:31731600-31743400	Weak transcription	Lung	lung
49	chr6:31731800-31733400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr6:31731800-31733400	Weak transcription	Skeletal Muscle Male	skeletal muscle

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