Variant report

Variant	rs11967752
Chromosome Location	chr6:37362855-37362856
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37361153..37363710-chr6:37365153..37366702,2	MCF-7	breast:
2	chr6:37358839..37361395-chr6:37362203..37365759,3	K562	blood:
3	chr6:37354319..37358453-chr6:37358678..37362908,5	K562	blood:
4	chr6:37360851..37366241-chr6:37366774..37371728,6	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs9462303	0.80[AMR][1000 genomes]
rs9462307	0.85[YRI][hapmap];0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9470572	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9470574	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9470576	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520294	chr6:37360557-37380324	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37324000-37366800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr6:37334400-37363200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:37337600-37363200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr6:37337600-37363200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:37343000-37363600	Strong transcription	Fetal Stomach	stomach
6	chr6:37343000-37365000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr6:37345600-37363400	Weak transcription	HUVEC	blood vessel
8	chr6:37347600-37363000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr6:37349800-37363800	Weak transcription	Colon Smooth Muscle	Colon
10	chr6:37350000-37368600	Weak transcription	Fetal Heart	heart
11	chr6:37352600-37363400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr6:37353800-37363400	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr6:37353800-37363800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:37354000-37363000	Strong transcription	Duodenum Smooth Muscle	Duodenum
15	chr6:37356200-37367400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:37356800-37363800	Strong transcription	Brain Cingulate Gyrus	brain
17	chr6:37357600-37364400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr6:37358000-37363400	Strong transcription	Lung	lung
19	chr6:37358800-37363400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr6:37359000-37364600	Weak transcription	NHDF-Ad	bronchial
21	chr6:37359000-37365000	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr6:37359000-37372600	Weak transcription	Stomach Mucosa	stomach
23	chr6:37359200-37363000	Weak transcription	Primary T helper cells PMA-I stimulated	--
24	chr6:37359200-37363400	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr6:37359200-37364200	Weak transcription	NHLF	lung
26	chr6:37359200-37364600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr6:37359200-37364600	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr6:37359200-37365000	Weak transcription	A549	lung
29	chr6:37359200-37367000	Weak transcription	Brain Angular Gyrus	brain
30	chr6:37359200-37367000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr6:37359400-37363000	Weak transcription	Fetal Muscle Trunk	muscle
32	chr6:37359400-37363600	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr6:37359400-37363600	Weak transcription	Small Intestine	intestine
34	chr6:37359400-37364400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr6:37359400-37364600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr6:37359400-37368400	Weak transcription	Fetal Intestine Large	intestine
37	chr6:37359600-37364800	Weak transcription	Primary neutrophils fromperipheralblood	blood
38	chr6:37359600-37374000	Weak transcription	NHEK	skin
39	chr6:37359800-37365800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr6:37360000-37363400	Strong transcription	Primary T cells from cord blood	blood
41	chr6:37360200-37363800	Weak transcription	Fetal Lung	lung
42	chr6:37360200-37364200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr6:37360200-37364600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr6:37360400-37363000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
45	chr6:37360400-37364600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr6:37360600-37363600	Strong transcription	Fetal Brain Female	brain
47	chr6:37360600-37364800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr6:37360600-37366200	Weak transcription	Brain Germinal Matrix	brain
49	chr6:37360800-37363800	Weak transcription	Primary hematopoietic stem cells	blood
50	chr6:37360800-37364000	Weak transcription	Duodenum Mucosa	Duodenum

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