Variant report

Variant	rs11967922
Chromosome Location	chr6:36822122-36822123
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:36818424..36822217-chr6:36952499..36954853,3	K562	blood:
2	chr6:36822060..36824191-chr6:36841169..36844111,2	K562	blood:
3	chr6:36815130..36818530-chr6:36818954..36823604,5	K562	blood:
4	chr6:36819964..36824038-chr6:36826260..36830015,5	MCF-7	breast:
5	chr6:36820493..36822217-chr6:36952499..36954085,2	K562	blood:
6	chr6:36819209..36822564-chr6:36824095..36826600,3	K562	blood:
7	chr6:36818579..36822639-chr6:36835896..36837920,3	K562	blood:
8	chr6:36821600..36824429-chr6:36828707..36831696,2	MCF-7	breast:
9	chr6:36821139..36823269-chr6:36836420..36838808,2	K562	blood:
10	chr6:36806147..36807797-chr6:36820995..36823911,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PPIL1-1	chr6:36819837-36822439	NONHSAT112236

No data

Variant related genes	Relation type
ENSG00000137168	Chromatin interaction
ENSG00000124772	Chromatin interaction
ENSG00000137409	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11964420	1.00[EUR][1000 genomes]
rs11967202	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11967728	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023171	chr6:36686935-36880899	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv538202	chr6:36686935-36880899	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1033261	chr6:36687424-36837315	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv5262	chr6:36799329-36826210	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv1030015	chr6:36818510-37104446	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36809000-36823000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr6:36811400-36823200	Weak transcription	Esophagus	oesophagus
3	chr6:36813200-36823200	Weak transcription	Brain Substantia Nigra	brain
4	chr6:36816600-36823000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:36817000-36823200	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr6:36817000-36826200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:36817000-36841400	Weak transcription	Colonic Mucosa	Colon
8	chr6:36817200-36823200	Weak transcription	Gastric	stomach
9	chr6:36817200-36823200	Weak transcription	Pancreas	Pancrea
10	chr6:36817200-36823600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr6:36817200-36830200	Weak transcription	Fetal Lung	lung
12	chr6:36817200-36833400	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr6:36817200-36841200	Weak transcription	Fetal Brain Male	brain
14	chr6:36817200-36842000	Weak transcription	Stomach Mucosa	stomach
15	chr6:36817600-36822400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr6:36818000-36822800	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr6:36818000-36824800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
18	chr6:36818200-36822200	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr6:36818600-36822200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr6:36818800-36822400	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr6:36819000-36823000	Weak transcription	Lung	lung
22	chr6:36819000-36830000	Weak transcription	Fetal Kidney	kidney
23	chr6:36819000-36840400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr6:36819200-36822200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr6:36819200-36822200	Enhancers	Psoas Muscle	Psoas
26	chr6:36819200-36823200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr6:36819400-36823000	Weak transcription	Brain Cingulate Gyrus	brain
28	chr6:36819400-36823200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr6:36819400-36834000	Strong transcription	Dnd41	blood
30	chr6:36819400-36841800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
31	chr6:36819600-36823000	Weak transcription	Ovary	ovary
32	chr6:36819600-36833400	Strong transcription	Primary T cells from cord blood	blood
33	chr6:36819800-36822800	Enhancers	Primary neutrophils fromperipheralblood	blood
34	chr6:36819800-36823000	Weak transcription	Rectal Smooth Muscle	rectum
35	chr6:36819800-36823600	Strong transcription	Fetal Muscle Trunk	muscle
36	chr6:36819800-36839800	Strong transcription	Fetal Thymus	thymus
37	chr6:36820000-36824000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr6:36820000-36824600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr6:36820000-36825000	Strong transcription	HUES48 Cell Line	embryonic stem cell
40	chr6:36820000-36825800	Strong transcription	H1 Cell Line	embryonic stem cell
41	chr6:36820000-36826200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr6:36820200-36822200	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
43	chr6:36820200-36822200	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr6:36820200-36822200	Strong transcription	GM12878-XiMat	blood
45	chr6:36820200-36824800	Strong transcription	HUES6 Cell Line	embryonic stem cell
46	chr6:36820200-36825000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
47	chr6:36820200-36825200	Strong transcription	Primary B cells from peripheral blood	blood
48	chr6:36820200-36825800	Strong transcription	Primary T cells fromperipheralblood	blood
49	chr6:36820200-36827000	Strong transcription	Thymus	Thymus
50	chr6:36820400-36823200	Weak transcription	Spleen	Spleen

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