Variant report

Variant	rs11967997
Chromosome Location	chr6:24849317-24849318
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:24843302..24844894-chr6:24849168..24851370,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000111913	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11962939	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11962982	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11969506	0.82[AFR][1000 genomes]
rs35254980	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs35698586	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61741706	0.97[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830609	chr6:24712086-24896647	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
2	nsv1022966	chr6:24763776-25154212	Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv538160	chr6:24763776-25154212	Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24777000-24859600	Weak transcription	Psoas Muscle	Psoas
2	chr6:24804800-24858200	Weak transcription	Gastric	stomach
3	chr6:24817800-24854400	Strong transcription	Primary B cells from cord blood	blood
4	chr6:24817800-24855800	Strong transcription	Primary neutrophils fromperipheralblood	blood
5	chr6:24818600-24855800	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr6:24818800-24856000	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr6:24818800-24856400	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr6:24830400-24855800	Weak transcription	Stomach Smooth Muscle	stomach
9	chr6:24832400-24859600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr6:24833000-24857800	Weak transcription	Brain Angular Gyrus	brain
11	chr6:24834600-24851600	Weak transcription	HSMM	muscle
12	chr6:24836000-24857200	Weak transcription	Fetal Brain Female	brain
13	chr6:24837000-24855800	Weak transcription	Ovary	ovary
14	chr6:24837800-24850000	Genic enhancers	Primary T helper cells PMA-I stimulated	--
15	chr6:24837800-24856000	Strong transcription	Fetal Thymus	thymus
16	chr6:24838000-24856400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr6:24838200-24854800	Strong transcription	Primary hematopoietic stem cells	blood
18	chr6:24838200-24856000	Strong transcription	Placenta	Placenta
19	chr6:24838200-24856400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr6:24838400-24851800	Strong transcription	Fetal Muscle Trunk	muscle
21	chr6:24838800-24855800	Weak transcription	Adipose Nuclei	Adipose
22	chr6:24839000-24854800	Strong transcription	Skeletal Muscle Female	skeletal muscle
23	chr6:24839200-24853600	Strong transcription	H9 Cell Line	embryonic stem cell
24	chr6:24839600-24858800	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr6:24840400-24854600	Strong transcription	HSMMtube	muscle
26	chr6:24840400-24854800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr6:24840400-24854800	Strong transcription	Thymus	Thymus
28	chr6:24840400-24856400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
29	chr6:24840600-24855000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr6:24841000-24855000	Weak transcription	Colonic Mucosa	Colon
31	chr6:24841200-24854400	Strong transcription	Primary B cells from peripheral blood	blood
32	chr6:24841200-24854800	Strong transcription	Placenta Amnion	Placenta Amnion
33	chr6:24841600-24853400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr6:24842000-24854800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr6:24842400-24856600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr6:24843000-24856000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr6:24843400-24855800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr6:24843400-24856000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr6:24843800-24858400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr6:24843800-24879400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr6:24844200-24859800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr6:24844600-24849600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr6:24844600-24854600	Weak transcription	Fetal Heart	heart
44	chr6:24844600-24854800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr6:24844600-24856600	Weak transcription	Colon Smooth Muscle	Colon
46	chr6:24844600-24858200	Weak transcription	Right Ventricle	heart
47	chr6:24844600-24860200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr6:24844600-24873200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr6:24845200-24853600	Strong transcription	Skeletal Muscle Male	skeletal muscle
50	chr6:24845200-24854000	Strong transcription	Dnd41	blood

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