Variant report

Variant	rs11968933
Chromosome Location	chr6:106967107-106967108
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:106955204..106959628-chr6:106966256..106969365,4	K562	blood:
2	chr6:106966221..106967730-chr6:107020396..107023333,2	K562	blood:
3	chr6:106915579..106917784-chr6:106966286..106969138,2	K562	blood:
4	chr6:106967096..106969158-chr6:106977366..106978928,2	K562	blood:
5	chr6:106966393..106967911-chr6:106970523..106972546,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11758592	1.00[CHB][hapmap]
rs3804338	1.00[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932155	chr6:106281728-107030467	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv532047	chr6:106591482-107143252	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv870375	chr6:106696090-107047892	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
4	nsv1025510	chr6:106791080-106982400	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv538404	chr6:106791080-106982400	Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:106961000-106967800	Weak transcription	Esophagus	oesophagus
2	chr6:106961000-106981000	Weak transcription	Lung	lung
3	chr6:106961000-107001400	Weak transcription	Gastric	stomach
4	chr6:106961200-106968600	Weak transcription	Pancreas	Pancrea
5	chr6:106962000-106972800	Weak transcription	Colon Smooth Muscle	Colon
6	chr6:106962600-106967400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr6:106963000-106967800	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr6:106963400-106968600	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr6:106963400-106972800	Weak transcription	HUVEC	blood vessel
10	chr6:106964400-106968200	Genic enhancers	Primary B cells from peripheral blood	blood
11	chr6:106964600-106967200	Weak transcription	Duodenum Mucosa	Duodenum
12	chr6:106964600-106972600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr6:106964800-106967400	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr6:106964800-106967600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr6:106964800-106967800	Weak transcription	Placenta	Placenta
16	chr6:106964800-106967800	Active TSS	GM12878-XiMat	blood
17	chr6:106964800-106973000	Weak transcription	Stomach Mucosa	stomach
18	chr6:106964800-106991000	Weak transcription	Spleen	Spleen
19	chr6:106964800-107029800	Weak transcription	Small Intestine	intestine
20	chr6:106965000-106967600	Weak transcription	Fetal Intestine Small	intestine
21	chr6:106965400-106968800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
22	chr6:106965400-106970200	Flanking Active TSS	Dnd41	blood
23	chr6:106966000-106967200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr6:106966000-106967400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr6:106966000-106967400	Weak transcription	Brain Hippocampus Middle	brain
26	chr6:106966200-106967400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
27	chr6:106966400-106967200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
28	chr6:106966400-106967200	Enhancers	Fetal Thymus	thymus
29	chr6:106966400-106968600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
30	chr6:106966400-106972000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
31	chr6:106966600-106967200	Enhancers	Thymus	Thymus
32	chr6:106966600-106967600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr6:106966600-106967800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr6:106966800-106967200	Enhancers	NHLF	lung
35	chr6:106966800-106967600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr6:106966800-106967600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
37	chr6:106966800-106968000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr6:106966800-106968600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
39	chr6:106966800-106968600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
40	chr6:106966800-106971200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
41	chr6:106967000-106967200	Enhancers	H9 Cell Line	embryonic stem cell
42	chr6:106967000-106967200	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr6:106967000-106967200	Active TSS	Rectal Mucosa Donor 29	rectum
44	chr6:106967000-106967200	Flanking Active TSS	NHEK	skin
45	chr6:106967000-106967400	Enhancers	HSMMtube	muscle
46	chr6:106967000-106967600	Flanking Active TSS	Primary B cells from cord blood	blood
47	chr6:106967000-106967600	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr6:106967000-106967600	Enhancers	Hela-S3	cervix
49	chr6:106967000-106967600	Flanking Active TSS	HMEC	breast
50	chr6:106967000-106967600	Flanking Active TSS	NH-A	brain

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