Variant report

Variant	rs11969393
Chromosome Location	chr6:143133089-143133090
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12190656	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12192671	1.00[CEU][hapmap]
rs12210586	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12211360	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830829	chr6:143058408-143218077	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv1019558	chr6:143121577-143154554	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143096200-143140800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr6:143105800-143140400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr6:143106000-143140400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr6:143112200-143139400	Weak transcription	HepG2	liver
5	chr6:143113200-143140400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr6:143114200-143140800	Weak transcription	Fetal Muscle Leg	muscle
7	chr6:143116000-143139600	Weak transcription	Small Intestine	intestine
8	chr6:143117000-143140800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr6:143118000-143137600	Weak transcription	Right Atrium	heart
10	chr6:143121200-143138400	Weak transcription	Primary B cells from peripheral blood	blood
11	chr6:143123400-143140600	Weak transcription	HSMM	muscle
12	chr6:143123400-143144000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr6:143123600-143139400	Weak transcription	Fetal Intestine Small	intestine
14	chr6:143124000-143137400	Weak transcription	NH-A	brain
15	chr6:143124000-143140600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr6:143124000-143140800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr6:143124200-143137400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr6:143124200-143140600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr6:143124400-143140800	Weak transcription	NHEK	skin
20	chr6:143124600-143137200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr6:143125000-143141000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr6:143125200-143140800	Weak transcription	HMEC	breast
23	chr6:143126000-143138800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr6:143126800-143140800	Weak transcription	Aorta	Aorta
25	chr6:143127000-143133200	Weak transcription	Right Ventricle	heart
26	chr6:143128200-143140600	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr6:143129000-143140600	Weak transcription	Fetal Kidney	kidney
28	chr6:143129200-143139200	Weak transcription	Esophagus	oesophagus
29	chr6:143130200-143140200	Weak transcription	Primary hematopoietic stem cells	blood
30	chr6:143130400-143133800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
31	chr6:143130600-143138600	Weak transcription	Primary B cells from cord blood	blood
32	chr6:143130800-143133600	Enhancers	Primary T cells fromperipheralblood	blood
33	chr6:143131600-143133200	Enhancers	Fetal Stomach	stomach
34	chr6:143131600-143140000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr6:143131800-143136400	Enhancers	Primary T helper cells fromperipheralblood	blood
36	chr6:143132000-143133200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr6:143132000-143133200	Enhancers	NHDF-Ad	bronchial
38	chr6:143132000-143133400	Enhancers	ES-I3 Cell Line	embryonic stem cell
39	chr6:143132000-143133400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr6:143132000-143133400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr6:143132000-143133400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr6:143132000-143133400	Enhancers	Brain Hippocampus Middle	brain
43	chr6:143132000-143133600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
44	chr6:143132000-143133800	Enhancers	Primary T helper naive cells from peripheral blood	blood
45	chr6:143132000-143134200	Enhancers	Primary T killer memory cells from peripheral blood	blood
46	chr6:143132000-143135400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
47	chr6:143132200-143133200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr6:143132200-143133200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr6:143132200-143133200	Enhancers	Fetal Brain Female	brain
50	chr6:143132200-143133400	Enhancers	HUES48 Cell Line	embryonic stem cell

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