Variant report

Variant	rs11971535
Chromosome Location	chr7:81060569-81060570
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10232061	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11972150	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11974601	0.82[ASN][1000 genomes]
rs11977550	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17155178	1.00[EUR][1000 genomes]
rs17155180	0.82[ASN][1000 genomes]
rs2158599	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029034	chr7:80838012-81137146	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:81057600-81063200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr7:81059200-81060600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr7:81059800-81060600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr7:81060000-81060600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr7:81060000-81066800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr7:81060200-81060600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr7:81060400-81062600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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