Variant report

Variant	rs11972053
Chromosome Location	chr7:108597399-108597400
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11975955	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56967988	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57946459	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58018832	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58180109	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59218791	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59599282	1.00[EUR][1000 genomes]
rs61268893	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6950236	1.00[EUR][1000 genomes]
rs6950592	1.00[AMR][1000 genomes]
rs6977942	1.00[EUR][1000 genomes]
rs73422636	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817371	chr7:108199882-108649799	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv888946	chr7:108592224-108644939	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv608075	chr7:108592224-108657719	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2756600	chr7:108593241-108607230	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv824251	chr7:108595570-108643855	Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv2757235	chr7:108595645-108660398	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	esv2759551	chr7:108595645-108660398	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv888947	chr7:108596014-108644939	Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv442060	chr7:108596015-108637601	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:108595600-108598200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:108597200-108597600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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