Variant report

Variant	rs11972372
Chromosome Location	chr7:71333554-71333555
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11972710	0.83[AFR][1000 genomes]
rs11977451	0.83[AFR][1000 genomes]
rs11981933	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026896	chr7:71003462-71721516	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1027496	chr7:71162362-71575116	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv916220	chr7:71200006-71708048	Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv531372	chr7:71300090-71909517	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
5	nsv981775	chr7:71327677-71338879	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:71309200-71335800	Weak transcription	Primary hematopoietic stem cells	blood
2	chr7:71320800-71336400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:71328200-71333600	Weak transcription	Fetal Thymus	thymus
4	chr7:71329400-71340800	Weak transcription	Right Atrium	heart
5	chr7:71330000-71341200	Weak transcription	Thymus	Thymus
6	chr7:71331000-71333600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr7:71332600-71336800	Enhancers	Dnd41	blood
8	chr7:71332800-71334400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr7:71333200-71333600	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr7:71333200-71333800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr7:71333200-71333800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr7:71333200-71334000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr7:71333200-71334400	Enhancers	NHEK	skin
14	chr7:71333200-71336600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr7:71333400-71333600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr7:71333400-71333600	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr7:71333400-71334000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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