Variant report

Variant	rs11972806
Chromosome Location	chr7:26227094-26227095
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:42)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:42 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:224594903..224596626-chr7:26226850..26229013,2	K562	blood:
2	chr7:26152221..26157308-chr7:26225005..26229751,7	K562	blood:
3	chr7:25931003..25932570-chr7:26225678..26227497,2	MCF-7	breast:
4	chr6:26157751..26159704-chr7:26225924..26228352,2	K562	blood:
5	chr7:26014155..26016824-chr7:26226230..26228691,2	K562	blood:
6	chr7:26127085..26136794-chr7:26224123..26230309,16	K562	blood:
7	chr7:26224902..26232884-chr7:26322008..26332976,29	K562	blood:
8	chr7:26226466..26228099-chr7:26385363..26387499,2	K562	blood:
9	chr7:26140097..26142166-chr7:26224742..26227594,2	K562	blood:
10	chr5:172887206..172889991-chr7:26225791..26227518,2	K562	blood:
11	chr7:26187891..26202612-chr7:26221953..26234536,42	K562	blood:
12	chr7:26226202..26228605-chr7:26311727..26314300,2	K562	blood:
13	chr7:26226324..26228907-chr7:26403420..26405277,2	K562	blood:
14	chr7:26145169..26147608-chr7:26224836..26227830,4	K562	blood:
15	chr7:26123870..26125696-chr7:26226783..26229178,2	MCF-7	breast:
16	chr11:65656679..65658694-chr7:26225133..26227712,2	K562	blood:
17	chr7:26136960..26140512-chr7:26226454..26229545,3	K562	blood:
18	chr7:26224941..26227535-chr7:26333597..26335223,2	K562	blood:
19	chr7:25930064..25934864-chr7:26225414..26230890,12	K562	blood:
20	chr7:26110644..26115952-chr7:26225900..26230055,7	K562	blood:
21	chr7:26181706..26184362-chr7:26226921..26229070,2	K562	blood:
22	chr5:137803047..137805590-chr7:26225142..26227880,2	K562	blood:
23	chr7:26225967..26229689-chr7:26296962..26299546,3	K562	blood:
24	chr7:26093464..26095409-chr7:26225078..26227432,2	K562	blood:
25	chr7:26225325..26227141-chr7:26354018..26356821,2	K562	blood:
26	chr7:26171147..26177551-chr7:26225022..26228862,6	K562	blood:
27	chr7:26187762..26202698-chr7:26218693..26233402,42	K562	blood:
28	chr7:26225358..26228940-chr7:26318718..26321554,4	K562	blood:
29	chr15:66789294..66791666-chr7:26226759..26229465,2	K562	blood:
30	chr7:26152455..26156873-chr7:26226826..26229761,5	K562	blood:
31	chr7:26226912..26227610-chr7:26240183..26241128,2	MCF-7	breast:
32	chr7:26111985..26114950-chr7:26225900..26229450,4	K562	blood:
33	chr7:26174186..26178287-chr7:26225672..26229068,5	K562	blood:
34	chr7:26204327..26208311-chr7:26225894..26230203,6	K562	blood:
35	chr7:26224549..26228496-chr7:26395464..26399879,4	K562	blood:
36	chr7:26076616..26078985-chr7:26226158..26229090,2	K562	blood:
37	chr7:26225358..26228144-chr7:26318718..26321292,4	K562	blood:
38	chr7:26224710..26231544-chr7:26402048..26407320,8	K562	blood:
39	chr7:26146073..26148941-chr7:26224609..26227830,4	K562	blood:
40	chr7:26212218..26214993-chr7:26226282..26231933,7	K562	blood:
41	chr7:26130771..26133250-chr7:26224106..26227853,3	MCF-7	breast:
42	chr7:26224902..26232884-chr7:26322942..26334107,28	K562	blood:

No data

Variant related genes	Relation type
ENSG00000122566	Chromatin interaction
ENSG00000050344	Chromatin interaction
ENSG00000086300	Chromatin interaction
ENSG00000158373	Chromatin interaction
ENSG00000122565	Chromatin interaction
ENSG00000175602	Chromatin interaction
ENSG00000273237	Chromatin interaction
ENSG00000266589	Chromatin interaction
ENSG00000174446	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs35052122	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv887849	chr7:26075094-26234302	Enhancers Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv1021308	chr7:26116605-26419720	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	166 gene(s)	inside rSNPs	diseases
3	nsv1018971	chr7:26161228-26380361	Strong transcription Flanking Active TSS Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26199400-26230200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr7:26200000-26227200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr7:26206600-26227600	Weak transcription	Esophagus	oesophagus
4	chr7:26207000-26227400	Weak transcription	Gastric	stomach
5	chr7:26207000-26227600	Weak transcription	Primary hematopoietic stem cells	blood
6	chr7:26207000-26228000	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr7:26207200-26228200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr7:26207400-26227800	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr7:26207600-26227400	Weak transcription	Primary T cells from cord blood	blood
10	chr7:26208000-26227400	Weak transcription	Brain Substantia Nigra	brain
11	chr7:26208800-26227600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr7:26212200-26227400	Weak transcription	Rectal Smooth Muscle	rectum
13	chr7:26213800-26228400	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr7:26214400-26228200	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr7:26215600-26228800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr7:26217200-26228000	Weak transcription	Fetal Brain Male	brain
17	chr7:26217400-26234800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
18	chr7:26218200-26236000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr7:26218600-26228600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr7:26218800-26231800	Weak transcription	Fetal Intestine Small	intestine
21	chr7:26219000-26233800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr7:26219600-26228200	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr7:26219600-26228200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr7:26219800-26227400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr7:26220000-26228000	Weak transcription	Fetal Kidney	kidney
26	chr7:26220600-26234200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr7:26221400-26227200	Weak transcription	Brain Angular Gyrus	brain
28	chr7:26221400-26228000	Weak transcription	Colon Smooth Muscle	Colon
29	chr7:26221800-26228000	Weak transcription	Fetal Lung	lung
30	chr7:26222200-26233200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr7:26222600-26227400	Weak transcription	Spleen	Spleen
32	chr7:26222600-26228200	Weak transcription	Ovary	ovary
33	chr7:26222600-26232000	Weak transcription	Right Atrium	heart
34	chr7:26222800-26227200	Weak transcription	Fetal Intestine Large	intestine
35	chr7:26222800-26227800	Weak transcription	Fetal Muscle Leg	muscle
36	chr7:26223000-26227800	Weak transcription	NHDF-Ad	bronchial
37	chr7:26223200-26227600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr7:26223200-26233200	Strong transcription	Fetal Thymus	thymus
39	chr7:26223400-26227400	Weak transcription	Adipose Nuclei	Adipose
40	chr7:26223800-26227400	Weak transcription	Aorta	Aorta
41	chr7:26223800-26231800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr7:26223800-26232200	Strong transcription	Primary neutrophils fromperipheralblood	blood
43	chr7:26223800-26232400	Genic enhancers	A549	lung
44	chr7:26223800-26233200	Strong transcription	HMEC	breast
45	chr7:26224000-26227600	Weak transcription	Colonic Mucosa	Colon
46	chr7:26224000-26229400	Weak transcription	HepG2	liver
47	chr7:26224000-26235000	Strong transcription	NH-A	brain
48	chr7:26224200-26228000	Weak transcription	Primary B cells from cord blood	blood
49	chr7:26224200-26228200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr7:26224200-26232600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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