Variant report

Variant	rs11972881
Chromosome Location	chr7:15594634-15594635
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:15365402..15367803-chr7:15593636..15595869,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11972400	1.00[AMR][1000 genomes]
rs11982718	1.00[AMR][1000 genomes]
rs11982971	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032569	chr7:14905287-15597069	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1032866	chr7:15336831-15622515	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv932168	chr7:15573437-15895294	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv606297	chr7:15582208-15621650	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv523199	chr7:15582208-16042596	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
6	esv3411551	chr7:15585761-15600479	Weak transcription Flanking Active TSS Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:15593000-15596800	Enhancers	HUVEC	blood vessel
2	chr7:15593400-15594800	Enhancers	Brain Substantia Nigra	brain
3	chr7:15593400-15595400	Enhancers	Osteobl	bone
4	chr7:15593400-15596400	Enhancers	NHDF-Ad	bronchial
5	chr7:15593400-15600600	Enhancers	Muscle Satellite Cultured Cells	--
6	chr7:15593800-15596800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr7:15594000-15594800	Flanking Active TSS	Liver	Liver
8	chr7:15594000-15595200	Weak transcription	Adipose Nuclei	Adipose
9	chr7:15594000-15599000	Weak transcription	Brain Angular Gyrus	brain
10	chr7:15594200-15595000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr7:15594200-15595600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr7:15594200-15596800	Weak transcription	Brain Hippocampus Middle	brain
13	chr7:15594200-15597600	Active TSS	A549	lung
14	chr7:15594200-15598600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr7:15594200-15599000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr7:15594200-15601200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr7:15594400-15594800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr7:15594400-15594800	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr7:15594400-15598600	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr7:15594600-15594800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr7:15594600-15595600	Weak transcription	Fetal Intestine Small	intestine
22	chr7:15594600-15596200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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