Variant report

Variant	rs11973340
Chromosome Location	chr7:14316491-14316492
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11975701	0.99[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs11982440	0.87[AFR][1000 genomes]
rs16878125	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs57338232	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs73281248	0.99[AFR][1000 genomes];0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14311600-14316800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr7:14311600-14318200	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr7:14315800-14317000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr7:14316200-14318000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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