Variant report

Variant	rs11974050
Chromosome Location	chr7:4000022-4000023
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:3991662..3993972-chr7:3998334..4001019,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1013492	0.85[ASN][1000 genomes]
rs10260999	0.86[ASN][1000 genomes]
rs10277771	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12534781	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12701305	0.97[ASN][1000 genomes]
rs12701325	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17134098	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2120331	0.91[ASN][1000 genomes]
rs3801066	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3801067	0.91[ASN][1000 genomes]
rs4720128	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62439587	0.98[ASN][1000 genomes]
rs6462500	0.94[ASN][1000 genomes]
rs6955390	0.94[ASN][1000 genomes]
rs6965800	0.94[ASN][1000 genomes]
rs6969705	0.93[ASN][1000 genomes]
rs6974821	0.93[ASN][1000 genomes]
rs6978757	0.94[ASN][1000 genomes]
rs6980159	0.94[ASN][1000 genomes]
rs6980313	0.94[ASN][1000 genomes]
rs7776705	0.92[ASN][1000 genomes]
rs7786879	0.85[ASN][1000 genomes]
rs7805988	0.84[ASN][1000 genomes]
rs968689	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021650	chr7:3665232-4577439	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1029406	chr7:3860894-4477095	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv538685	chr7:3860894-4477095	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1026410	chr7:3869104-4383606	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1025497	chr7:3905444-4176032	Enhancers Strong transcription ZNF genes & repeats Genic enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv538686	chr7:3905444-4176032	Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv433014	chr7:3910039-4054769	Strong transcription Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv464274	chr7:3955516-4613607	Weak transcription Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv464275	chr7:3955516-4613607	Enhancers Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv464276	chr7:3955516-4613607	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv464277	chr7:3955516-4613607	Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv464278	chr7:3955516-4613607	Strong transcription Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	nsv605939	chr7:3955516-4613607	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
14	nsv1019086	chr7:3968656-4044519	ZNF genes & repeats Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv538687	chr7:3968656-4044519	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
16	nsv1019305	chr7:3991646-4276004	Enhancers Weak transcription Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:3988400-4005400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:3988600-4010000	Weak transcription	Left Ventricle	heart
3	chr7:3988600-4032600	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr7:3988800-4001600	Weak transcription	Right Atrium	heart
5	chr7:3989200-4013800	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr7:3989400-4031000	Weak transcription	Right Ventricle	heart
7	chr7:3989800-4002400	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr7:3989800-4020800	Weak transcription	Colon Smooth Muscle	Colon
9	chr7:3991600-4001400	Weak transcription	Stomach Smooth Muscle	stomach
10	chr7:3991800-4001400	Weak transcription	Fetal Brain Female	brain
11	chr7:3995200-4007400	Weak transcription	Brain Germinal Matrix	brain
12	chr7:3995400-4001800	Weak transcription	Fetal Intestine Small	intestine
13	chr7:3995600-4001400	Weak transcription	Pancreas	Pancrea
14	chr7:3995800-4001400	Weak transcription	Fetal Kidney	kidney
15	chr7:3995800-4001400	Weak transcription	Fetal Lung	lung
16	chr7:3995800-4001400	Weak transcription	HepG2	liver
17	chr7:3996200-4007200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr7:3996200-4017200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr7:3996400-4001800	Weak transcription	Fetal Stomach	stomach
20	chr7:3996400-4015800	Weak transcription	HSMM	muscle
21	chr7:3996400-4037600	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr7:3997000-4001400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr7:3997000-4006400	Weak transcription	Spleen	Spleen
24	chr7:3997000-4019400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr7:3998000-4003600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr7:3998000-4020800	Weak transcription	Rectal Smooth Muscle	rectum
27	chr7:3998400-4045600	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr7:3998600-4000200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr7:3998600-4000400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr7:3998600-4000400	Strong transcription	Aorta	Aorta
31	chr7:3998800-4007000	Weak transcription	Gastric	stomach
32	chr7:3999000-4006800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr7:3999200-4009600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr7:3999600-4003000	Weak transcription	Brain Substantia Nigra	brain
35	chr7:3999600-4005400	Weak transcription	Brain Cingulate Gyrus	brain
36	chr7:3999800-4000400	Enhancers	Fetal Brain Male	brain
37	chr7:3999800-4000400	Enhancers	Fetal Thymus	thymus
38	chr7:3999800-4003800	Weak transcription	Brain Hippocampus Middle	brain
39	chr7:4000000-4000200	Enhancers	Skeletal Muscle Male	skeletal muscle
40	chr7:4000000-4000400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr7:4000000-4000400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
42	chr7:4000000-4002200	Weak transcription	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links