Variant report

Variant	rs11974494
Chromosome Location	chr7:83468646-83468647
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12113514	1.00[EUR][1000 genomes]
rs2371954	1.00[ASN][1000 genomes]
rs6952816	1.00[ASN][1000 genomes]
rs73390507	0.86[ASN][1000 genomes]
rs73390514	1.00[EUR][1000 genomes]
rs73390517	1.00[EUR][1000 genomes]
rs73390530	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888617	chr7:83352427-83479375	Flanking Active TSS ZNF genes & repeats Enhancers Bivalent Enhancer Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv607707	chr7:83381032-83646816	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1020865	chr7:83393101-83504439	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1017260	chr7:83393101-83506643	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv888619	chr7:83452312-83549032	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv888620	chr7:83459908-83593805	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:83460400-83478800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr7:83464200-83474800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr7:83465000-83468800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr7:83465400-83469000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr7:83465800-83468800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr7:83465800-83474200	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr7:83466400-83468800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr7:83468200-83469200	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr7:83468200-83469600	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr7:83468200-83470000	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr7:83468400-83469200	Enhancers	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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