Variant report

Variant	rs11974528
Chromosome Location	chr7:107832411-107832412
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:107826342..107829124-chr7:107830145..107834558,4	K562	blood:
2	chr7:107819867..107822378-chr7:107829973..107832574,2	K562	blood:
3	chr7:107832223..107834725-chr7:107897549..107900223,2	MCF-7	breast:
4	chr7:107831583..107833126-chr7:108092027..108094730,2	MCF-7	breast:
5	chr7:107831524..107834140-chr7:108166165..108167675,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000135241	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs107588	0.83[CHD][hapmap];1.00[JPT][hapmap]
rs107589	0.83[CHD][hapmap];1.00[JPT][hapmap]
rs16872418	1.00[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.83[AMR][1000 genomes]
rs17155187	0.81[YRI][hapmap]
rs1735498	0.88[ASN][1000 genomes]
rs2079711	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2142325	0.83[CHD][hapmap];1.00[JPT][hapmap]
rs371613	1.00[JPT][hapmap]
rs376375	0.89[JPT][hapmap]
rs3819740	0.83[CHD][hapmap];1.00[JPT][hapmap]
rs3819746	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs393266	1.00[JPT][hapmap]
rs399543	0.89[JPT][hapmap]
rs401433	1.00[JPT][hapmap]
rs417455	1.00[JPT][hapmap]
rs422327	1.00[JPT][hapmap]
rs427909	0.83[CHD][hapmap];1.00[JPT][hapmap]
rs428459	0.89[JPT][hapmap]
rs439652	1.00[JPT][hapmap]
rs441534	1.00[JPT][hapmap]
rs4730294	1.00[JPT][hapmap]
rs6962066	1.00[JPT][hapmap]
rs6970656	0.83[CHD][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033979	chr7:107003734-107877761	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
3	nsv949344	chr7:107396502-107987085	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv831089	chr7:107687618-107877240	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
5	nsv831090	chr7:107786650-108011196	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
6	nsv888941	chr7:107796150-107863395	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
7	nsv1030222	chr7:107809927-107844916	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:107786800-107857800	Weak transcription	Brain Cingulate Gyrus	brain
2	chr7:107787800-107844200	Weak transcription	Brain Germinal Matrix	brain
3	chr7:107818200-107851800	Weak transcription	HSMMtube	muscle
4	chr7:107818600-107848400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr7:107820600-107867400	Weak transcription	Brain Angular Gyrus	brain
6	chr7:107820800-107834600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr7:107820800-107840800	Weak transcription	Placenta	Placenta
8	chr7:107820800-107846800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr7:107820800-107850600	Weak transcription	Fetal Intestine Large	intestine
10	chr7:107820800-107851200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr7:107821000-107852200	Weak transcription	Fetal Muscle Leg	muscle
12	chr7:107821600-107850400	Weak transcription	Fetal Brain Male	brain
13	chr7:107822000-107834000	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr7:107823200-107834400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr7:107823400-107833800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr7:107826800-107833800	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr7:107827600-107836600	Strong transcription	Cortex derived primary cultured neurospheres	brain
18	chr7:107827800-107836000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr7:107828000-107852000	Weak transcription	Pancreas	Pancrea
20	chr7:107828600-107838200	Strong transcription	A549	lung
21	chr7:107828800-107846600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr7:107828800-107851400	Weak transcription	Fetal Intestine Small	intestine
23	chr7:107829600-107848600	Weak transcription	Brain Anterior Caudate	brain
24	chr7:107830200-107834400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr7:107830200-107836200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr7:107830400-107839800	Weak transcription	Brain Substantia Nigra	brain
27	chr7:107830400-107857200	Weak transcription	Fetal Brain Female	brain
28	chr7:107830400-107886400	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr7:107830600-107833800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr7:107830600-107834200	Weak transcription	HUVEC	blood vessel
31	chr7:107831000-107835000	Weak transcription	Thymus	Thymus
32	chr7:107831600-107832600	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr7:107831600-107836200	Weak transcription	HSMM	muscle
34	chr7:107831800-107835400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr7:107832000-107836200	Weak transcription	Osteobl	bone
36	chr7:107832000-107836400	Weak transcription	NHDF-Ad	bronchial
37	chr7:107832200-107832800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr7:107832200-107835000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr7:107832400-107835800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links