Variant report

Variant	rs11974872
Chromosome Location	chr7:78891197-78891198
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10085854	0.85[EUR][1000 genomes]
rs10225318	0.81[EUR][1000 genomes]
rs10244816	0.90[EUR][1000 genomes]
rs10258290	0.81[EUR][1000 genomes]
rs10264341	0.90[EUR][1000 genomes]
rs10274797	0.90[EUR][1000 genomes]
rs10485936	0.83[AFR][1000 genomes]
rs11972217	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11974844	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11977156	0.90[EUR][1000 genomes]
rs11979157	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11980152	0.90[EUR][1000 genomes]
rs11980253	0.90[ASN][1000 genomes]
rs12666679	0.82[EUR][1000 genomes]
rs12666680	0.90[EUR][1000 genomes]
rs12670442	0.90[EUR][1000 genomes]
rs12670971	0.86[EUR][1000 genomes]
rs12670981	0.90[EUR][1000 genomes]
rs12706106	0.90[EUR][1000 genomes]
rs12706107	0.90[EUR][1000 genomes]
rs1358471	0.90[EUR][1000 genomes]
rs1406153	0.90[EUR][1000 genomes]
rs1406154	0.90[EUR][1000 genomes]
rs1406155	0.90[EUR][1000 genomes]
rs1406156	0.90[EUR][1000 genomes]
rs1528262	0.81[EUR][1000 genomes]
rs1534492	0.90[EUR][1000 genomes]
rs1534493	0.90[EUR][1000 genomes]
rs1609273	0.90[EUR][1000 genomes]
rs1609274	0.90[EUR][1000 genomes]
rs1609275	0.90[EUR][1000 genomes]
rs1609276	0.90[EUR][1000 genomes]
rs16886476	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17147873	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17152076	0.90[ASN][1000 genomes]
rs17152224	0.90[EUR][1000 genomes]
rs17152238	0.90[EUR][1000 genomes]
rs17152245	0.90[EUR][1000 genomes]
rs1918932	0.90[EUR][1000 genomes]
rs1997277	0.81[EUR][1000 genomes]
rs2178169	0.90[EUR][1000 genomes]
rs28401690	0.90[EUR][1000 genomes]
rs28450541	0.81[EUR][1000 genomes]
rs28611031	0.81[EUR][1000 genomes]
rs28700941	0.81[EUR][1000 genomes]
rs4727839	0.90[EUR][1000 genomes]
rs4727840	0.90[EUR][1000 genomes]
rs4727842	0.90[EUR][1000 genomes]
rs4730757	0.90[EUR][1000 genomes]
rs4730758	0.90[EUR][1000 genomes]
rs56829360	0.81[EUR][1000 genomes]
rs59620956	0.90[EUR][1000 genomes]
rs61075638	0.81[EUR][1000 genomes]
rs6466602	0.81[EUR][1000 genomes]
rs6963053	0.90[EUR][1000 genomes]
rs6963068	0.90[EUR][1000 genomes]
rs6975958	0.90[EUR][1000 genomes]
rs73375128	0.90[EUR][1000 genomes]
rs73375139	0.90[EUR][1000 genomes]
rs73375150	0.90[EUR][1000 genomes]
rs73375151	0.90[EUR][1000 genomes]
rs73375156	0.90[EUR][1000 genomes]
rs73375167	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464598	chr7:78492642-79483480	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv607659	chr7:78492642-79483480	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv1029799	chr7:78608097-79061737	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv437988	chr7:78806100-78910974	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv831041	chr7:78819499-78973222	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv2764028	chr7:78874740-79112630	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78888400-78898000	Weak transcription	Pancreatic Islets	Pancreatic Islet

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