Variant report

Variant	rs11975130
Chromosome Location	chr7:28135812-28135813
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:28101445..28102346-chr7:28135549..28136870,4	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17156137	1.00[CEU][hapmap]
rs17156218	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030685	chr7:27844038-28177301	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:28102400-28176400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr7:28117600-28143400	Weak transcription	Aorta	Aorta
3	chr7:28118000-28136200	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr7:28121000-28136400	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr7:28122800-28143400	Weak transcription	Spleen	Spleen
6	chr7:28124200-28145800	Weak transcription	Fetal Stomach	stomach
7	chr7:28124600-28142400	Weak transcription	HMEC	breast
8	chr7:28124800-28136600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr7:28124800-28143400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr7:28126600-28136600	Weak transcription	Brain Angular Gyrus	brain
11	chr7:28128200-28136400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr7:28128400-28136600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr7:28128400-28142800	Weak transcription	Fetal Muscle Leg	muscle
14	chr7:28128800-28136400	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr7:28129000-28138000	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr7:28129000-28142400	Weak transcription	NHLF	lung
17	chr7:28129000-28142600	Weak transcription	Right Atrium	heart
18	chr7:28129200-28140000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr7:28129200-28159000	Weak transcription	Primary T cells from cord blood	blood
20	chr7:28129800-28142600	Weak transcription	Gastric	stomach
21	chr7:28131600-28142400	Weak transcription	Osteobl	bone
22	chr7:28132000-28141800	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr7:28133600-28142600	Weak transcription	Pancreas	Pancrea
24	chr7:28133800-28136600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr7:28133800-28141800	Weak transcription	A549	lung
26	chr7:28134000-28136400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr7:28134000-28136600	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr7:28134000-28137400	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr7:28134000-28138400	Enhancers	Colon Smooth Muscle	Colon
30	chr7:28134000-28140400	Weak transcription	HSMMtube	muscle
31	chr7:28134000-28142400	Weak transcription	HSMM	muscle
32	chr7:28134000-28143600	Weak transcription	Primary T cells fromperipheralblood	blood
33	chr7:28134200-28136400	Weak transcription	Stomach Smooth Muscle	stomach
34	chr7:28134200-28142600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr7:28134400-28136400	Enhancers	Monocytes-CD14+_RO01746	blood
36	chr7:28134600-28137400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr7:28135200-28136000	Enhancers	Left Ventricle	heart
38	chr7:28135200-28136600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr7:28135200-28136800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
40	chr7:28135400-28136200	Weak transcription	Primary B cells from peripheral blood	blood
41	chr7:28135400-28136400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr7:28135400-28136600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr7:28135400-28138000	Enhancers	ES-I3 Cell Line	embryonic stem cell
44	chr7:28135600-28136000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr7:28135600-28136600	Weak transcription	Primary B cells from cord blood	blood
46	chr7:28135600-28142600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr7:28135800-28136200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr7:28135800-28136200	Weak transcription	Rectal Smooth Muscle	rectum
49	chr7:28135800-28136600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr7:28135800-28136800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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