Variant report

Variant	rs11975135
Chromosome Location	chr7:53671560-53671561
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11763073	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11772083	0.82[EUR][1000 genomes]
rs11981641	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12671927	0.98[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12673758	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17135887	0.81[AMR][1000 genomes]
rs17624320	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17624413	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2160845	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28655380	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4510805	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4580995	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62446159	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62447960	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6593089	0.80[EUR][1000 genomes]
rs6593092	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6949435	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6951162	0.82[EUR][1000 genomes]
rs6955484	0.80[EUR][1000 genomes]
rs6961780	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7784833	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7795768	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7809106	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948546	chr7:53538304-54337148	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1032785	chr7:53660651-53758673	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:53670400-53671600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:53670400-53671600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr7:53670400-53672000	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr7:53670400-53672000	Enhancers	Placenta	Placenta
5	chr7:53670400-53672000	Enhancers	NHEK	skin
6	chr7:53670400-53672200	Enhancers	HMEC	breast
7	chr7:53670800-53671600	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr7:53671000-53671600	Enhancers	Esophagus	oesophagus
9	chr7:53671200-53671600	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr7:53671400-53671600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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