Variant report

Variant	rs11975401
Chromosome Location	chr7:40644682-40644683
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11971027	1.00[AMR][1000 genomes]
rs11975346	1.00[YRI][hapmap]
rs11976852	1.00[YRI][hapmap]
rs11976870	1.00[YRI][hapmap]
rs11981180	1.00[YRI][hapmap]
rs11981582	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs11982558	1.00[AMR][1000 genomes]
rs6979422	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030648	chr7:40218618-41032599	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv887987	chr7:40505382-40748650	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv830971	chr7:40523075-40700172	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1025605	chr7:40623026-40789063	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv538823	chr7:40623026-40789063	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:40642600-40651800	Weak transcription	HSMM	muscle
2	chr7:40643800-40645000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr7:40644200-40644800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:40644200-40644800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr7:40644200-40644800	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr7:40644200-40644800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr7:40644200-40644800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr7:40644200-40646200	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr7:40644400-40644800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr7:40644400-40644800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr7:40644400-40644800	Enhancers	Sigmoid Colon	Sigmoid Colon
12	chr7:40644400-40645000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr7:40644600-40645400	Weak transcription	Aorta	Aorta
14	chr7:40644600-40645600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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