Variant report

Variant	rs11975469
Chromosome Location	chr7:119124687-119124688
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10155844	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs10156039	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10231302	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs10231611	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs10247541	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10253094	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs10256663	1.00[YRI][hapmap]
rs10261730	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs10263097	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12113264	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12113265	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs12539502	1.00[MEX][hapmap]
rs3923947	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs3923948	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs4265132	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6967849	1.00[YRI][hapmap]
rs73719336	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7797687	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889100	chr7:118744450-119247571	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv889101	chr7:118778802-119177670	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv889102	chr7:118904729-119177670	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv889104	chr7:118926390-119177670	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv889105	chr7:118928231-119177670	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv889106	chr7:118928231-119197465	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv608315	chr7:118934464-119161743	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv889107	chr7:118942357-119177670	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv608316	chr7:118945681-119133195	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv464704	chr7:118958980-119133195	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv608317	chr7:118958980-119133195	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv608318	chr7:118958980-119161743	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv889108	chr7:119044579-119177670	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	nsv889109	chr7:119068130-119177670	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	nsv889110	chr7:119068130-119186068	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	nsv508478	chr7:119112047-119127707	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
17	esv2829883	chr7:119113888-119161743	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
18	nsv608319	chr7:119113888-119161743	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
19	nsv889111	chr7:119113888-119197465	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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