Variant report

Variant	rs11976632
Chromosome Location	chr7:86804284-86804285
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:86803529..86806117-chr7:86811456..86813174,3	K562	blood:

Variant related genes	Relation type
ENSG00000135164	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11971364	0.84[AFR][1000 genomes]
rs11974238	0.84[AFR][1000 genomes]
rs11976564	0.84[AFR][1000 genomes]
rs11976589	0.92[AFR][1000 genomes]
rs11980996	0.84[AFR][1000 genomes]
rs11981403	0.84[AFR][1000 genomes]
rs11983560	0.83[AFR][1000 genomes]
rs11983834	0.83[AFR][1000 genomes]
rs55817867	0.84[AFR][1000 genomes]
rs56397073	0.84[AFR][1000 genomes]
rs73206967	0.84[AFR][1000 genomes]
rs73206972	0.84[AFR][1000 genomes]
rs73206974	0.84[AFR][1000 genomes]
rs73206976	0.84[AFR][1000 genomes]
rs73206980	0.84[AFR][1000 genomes]
rs73206981	0.84[AFR][1000 genomes]
rs73206988	0.84[AFR][1000 genomes]
rs73206989	0.84[AFR][1000 genomes]
rs73206994	0.84[AFR][1000 genomes]
rs73206998	0.80[AFR][1000 genomes]
rs73207002	0.84[AFR][1000 genomes]
rs73208503	0.84[AFR][1000 genomes]
rs73208506	0.84[AFR][1000 genomes]
rs73208509	0.84[AFR][1000 genomes]
rs73208511	0.84[AFR][1000 genomes]
rs73208512	0.84[AFR][1000 genomes]
rs73208515	0.84[AFR][1000 genomes]
rs73208516	0.84[AFR][1000 genomes]
rs73208519	0.84[AFR][1000 genomes]
rs73208521	0.84[AFR][1000 genomes]
rs73208528	0.84[AFR][1000 genomes]
rs73208532	0.84[AFR][1000 genomes]
rs73208540	0.84[AFR][1000 genomes]
rs73208541	0.84[AFR][1000 genomes]
rs73208547	0.84[AFR][1000 genomes]
rs73208550	0.84[AFR][1000 genomes]
rs73208553	0.84[AFR][1000 genomes]
rs73210216	0.84[AFR][1000 genomes]
rs73210219	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025277	chr7:86299224-87206007	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv538999	chr7:86299224-87206007	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv532147	chr7:86299225-87121975	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	nsv527889	chr7:86496042-86832603	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
5	nsv1016761	chr7:86758544-86914152	Enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
6	nsv888676	chr7:86781423-86858824	Active TSS Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
7	nsv1026193	chr7:86790391-86856448	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
8	nsv539003	chr7:86790391-86856448	Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
9	nsv888677	chr7:86802025-87781111	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:86782600-86811400	Weak transcription	Spleen	Spleen
2	chr7:86782800-86810800	Weak transcription	Esophagus	oesophagus
3	chr7:86782800-86811400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr7:86783000-86834000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr7:86785600-86813400	Weak transcription	Stomach Mucosa	stomach
6	chr7:86785600-86822600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr7:86786600-86828400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr7:86788600-86830400	Strong transcription	HUES64 Cell Line	embryonic stem cell
9	chr7:86788600-86832400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr7:86789000-86832400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr7:86789000-86832400	Strong transcription	Dnd41	blood
12	chr7:86789400-86830800	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr7:86789600-86832400	Strong transcription	Fetal Thymus	thymus
14	chr7:86789800-86833000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
15	chr7:86790000-86811400	Weak transcription	Pancreas	Pancrea
16	chr7:86791000-86831600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr7:86791200-86829400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
18	chr7:86791400-86807200	Strong transcription	Osteobl	bone
19	chr7:86791400-86807800	Strong transcription	Primary B cells from peripheral blood	blood
20	chr7:86791400-86809200	Strong transcription	K562	blood
21	chr7:86791400-86819800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr7:86791400-86830000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr7:86791400-86831800	Strong transcription	HUES48 Cell Line	embryonic stem cell
24	chr7:86791400-86831800	Strong transcription	HUES6 Cell Line	embryonic stem cell
25	chr7:86791600-86810800	Weak transcription	Small Intestine	intestine
26	chr7:86791600-86830600	Strong transcription	Primary T cells fromperipheralblood	blood
27	chr7:86791600-86830600	Strong transcription	NHDF-Ad	bronchial
28	chr7:86791800-86805200	Strong transcription	Primary T helper cells PMA-I stimulated	--
29	chr7:86791800-86831000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr7:86792000-86817600	Strong transcription	Primary hematopoietic stem cells	blood
31	chr7:86792000-86829200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr7:86792400-86806200	Strong transcription	HSMM	muscle
33	chr7:86792400-86807800	Strong transcription	Primary neutrophils fromperipheralblood	blood
34	chr7:86792400-86827200	Strong transcription	Primary T helper cells fromperipheralblood	blood
35	chr7:86792400-86828600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr7:86792400-86828600	Strong transcription	HUVEC	blood vessel
37	chr7:86792400-86829800	Strong transcription	Primary monocytes fromperipheralblood	blood
38	chr7:86792400-86831600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr7:86792600-86805000	Strong transcription	Left Ventricle	heart
40	chr7:86792600-86805800	Strong transcription	Duodenum Smooth Muscle	Duodenum
41	chr7:86792600-86806200	Strong transcription	Skeletal Muscle Female	skeletal muscle
42	chr7:86792600-86806400	Strong transcription	Duodenum Mucosa	Duodenum
43	chr7:86792600-86807400	Strong transcription	Placenta	Placenta
44	chr7:86792600-86808000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr7:86792600-86808200	Strong transcription	HepG2	liver
46	chr7:86792600-86808600	Strong transcription	Fetal Lung	lung
47	chr7:86792600-86824000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr7:86792600-86828800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
49	chr7:86792600-86829800	Strong transcription	H1 Cell Line	embryonic stem cell
50	chr7:86792600-86830800	Strong transcription	Primary B cells from cord blood	blood

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