Variant report

Variant	rs11977004
Chromosome Location	chr7:140231801-140231802
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:140225049..140227766-chr7:140230491..140233082,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10237118	0.96[EUR][1000 genomes]
rs10277628	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10280493	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2363830	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs269251	1.00[ASN][1000 genomes]
rs269252	1.00[ASN][1000 genomes]
rs6464833	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6942494	0.96[EUR][1000 genomes]
rs6948434	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6948774	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6952208	0.82[EUR][1000 genomes]
rs6952414	0.82[EUR][1000 genomes]
rs6952999	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6975258	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6976066	0.82[EUR][1000 genomes]
rs6980049	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1803443	chr7:140146694-140263109	Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	12 gene(s)	inside rSNPs	diseases
2	esv2761112	chr7:140191538-140234571	Strong transcription Genic enhancers Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	nsv464735	chr7:140195463-140233585	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	nsv608501	chr7:140195463-140233585	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
5	nsv1015856	chr7:140197079-140235677	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
6	nsv1019815	chr7:140206590-140235677	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
7	esv1802929	chr7:140212566-140285491	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140206800-140233200	Weak transcription	Brain Angular Gyrus	brain
2	chr7:140207000-140241000	Weak transcription	Fetal Brain Male	brain
3	chr7:140218200-140241400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr7:140219000-140233200	Weak transcription	NHDF-Ad	bronchial
5	chr7:140219200-140240800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr7:140219600-140240800	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr7:140219800-140233200	Strong transcription	Fetal Muscle Leg	muscle
8	chr7:140222000-140234600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr7:140223400-140241000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr7:140223600-140235000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr7:140223600-140238000	Weak transcription	Rectal Smooth Muscle	rectum
12	chr7:140223600-140240800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr7:140223800-140234400	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr7:140224000-140233200	Weak transcription	Placenta	Placenta
15	chr7:140224000-140239200	Weak transcription	Brain Anterior Caudate	brain
16	chr7:140226000-140241000	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr7:140226000-140241400	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr7:140226000-140244000	Weak transcription	Brain Cingulate Gyrus	brain
19	chr7:140226000-140244000	Weak transcription	Pancreas	Pancrea
20	chr7:140226200-140241000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr7:140226200-140262800	Weak transcription	Gastric	stomach
22	chr7:140226400-140232400	Weak transcription	Colonic Mucosa	Colon
23	chr7:140226400-140232400	Weak transcription	Left Ventricle	heart
24	chr7:140226400-140233200	Strong transcription	Fetal Muscle Trunk	muscle
25	chr7:140226400-140237200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr7:140226400-140239200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr7:140226600-140233000	Weak transcription	Brain Germinal Matrix	brain
28	chr7:140226600-140233200	Weak transcription	Ovary	ovary
29	chr7:140226600-140240200	Weak transcription	Right Ventricle	heart
30	chr7:140226600-140241200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr7:140226600-140241400	Weak transcription	Fetal Intestine Large	intestine
32	chr7:140226800-140239000	Weak transcription	Fetal Kidney	kidney
33	chr7:140226800-140240800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr7:140227000-140233200	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr7:140227000-140238800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr7:140227200-140232400	Weak transcription	Fetal Brain Female	brain
37	chr7:140227200-140233200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr7:140227200-140234600	Weak transcription	Spleen	Spleen
39	chr7:140227200-140239400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr7:140227400-140232400	Weak transcription	Fetal Intestine Small	intestine
41	chr7:140227400-140233000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr7:140227400-140233200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr7:140227400-140233200	Weak transcription	NHLF	lung
44	chr7:140227400-140239200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr7:140227400-140241000	Weak transcription	Right Atrium	heart
46	chr7:140227600-140233000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr7:140227600-140237600	Weak transcription	Stomach Smooth Muscle	stomach
48	chr7:140227600-140240800	Weak transcription	NH-A	brain
49	chr7:140227600-140243800	Weak transcription	Brain Hippocampus Middle	brain
50	chr7:140228200-140233200	Weak transcription	Adipose Nuclei	Adipose

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