Variant report
| Variant | rs11977984 |
|---|---|
| Chromosome Location | chr7:103996031-103996032 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:103994443..103997481-chr7:104000926..104004023,3 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:2)
| rs_ID | r2[population] |
|---|---|
| rs17136882 | 0.86[JPT][hapmap] |
| rs7794181 | 0.90[CHB][hapmap];0.86[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv608067 | chr7:103944237-104029408 | Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:5)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs11977984 | PVRIG | cis | cerebellum | SCAN |
| rs11977984 | ZNHIT1 | cis | cerebellum | SCAN |
| rs11977984 | PMS2L1 | cis | cerebellum | SCAN |
| rs11977984 | ATXN7L1 | cis | cerebellum | SCAN |
| rs11977984 | ZNHIT1 | cis | parietal | SCAN |
Chromatin state (count:0 , 50 per page) page:
| No data |
