Variant report

Variant	rs11978097
Chromosome Location	chr7:86339430-86339431
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11972852	1.00[AMR][1000 genomes]
rs11976425	1.00[AMR][1000 genomes]
rs11976772	1.00[AMR][1000 genomes]
rs11976887	1.00[AMR][1000 genomes]
rs11978143	1.00[AMR][1000 genomes]
rs11978530	1.00[AMR][1000 genomes]
rs11981798	1.00[AMR][1000 genomes]
rs41381245	1.00[AMR][1000 genomes]
rs57405302	1.00[AMR][1000 genomes]
rs59320507	1.00[AMR][1000 genomes]
rs59495052	1.00[AMR][1000 genomes]
rs60180790	1.00[AMR][1000 genomes]
rs6965718	1.00[AMR][1000 genomes]
rs73398411	1.00[AMR][1000 genomes]
rs781021	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025032	chr7:86032479-86642973	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv831053	chr7:86268171-86440999	Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1025277	chr7:86299224-87206007	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
4	nsv538999	chr7:86299224-87206007	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
5	nsv532147	chr7:86299225-87121975	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:86334000-86342400	Enhancers	Brain Angular Gyrus	brain
2	chr7:86337800-86339600	Enhancers	Brain Substantia Nigra	brain
3	chr7:86339000-86340000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr7:86339000-86341400	Weak transcription	Brain Cingulate Gyrus	brain
5	chr7:86339000-86342000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr7:86339200-86340200	Weak transcription	Brain Anterior Caudate	brain
7	chr7:86339400-86340200	Weak transcription	Brain Hippocampus Middle	brain
8	chr7:86339400-86342600	Weak transcription	Brain Inferior Temporal Lobe	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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