Variant report

Variant	rs11978363
Chromosome Location	chr7:50470299-50470300
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:50468922..50471406-chr7:50471643..50473189,2	K562	blood:
2	chr7:50467942..50470799-chr7:50474362..50477015,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11575399	1.00[AMR][1000 genomes]
rs11974997	1.00[AMR][1000 genomes]
rs11977456	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4129077	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016665	chr7:50452552-51404524	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:50431400-50472600	Strong transcription	Primary neutrophils fromperipheralblood	blood
2	chr7:50461600-50472600	Strong transcription	Dnd41	blood
3	chr7:50464200-50471600	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr7:50464400-50470600	Genic enhancers	Primary T cells fromperipheralblood	blood
5	chr7:50464400-50474400	Strong transcription	Thymus	Thymus
6	chr7:50464600-50471200	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr7:50464600-50472200	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr7:50464800-50472200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
9	chr7:50464800-50472400	Strong transcription	Primary hematopoietic stem cells	blood
10	chr7:50464800-50472400	Strong transcription	Fetal Thymus	thymus
11	chr7:50465400-50472800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr7:50465600-50470400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr7:50465600-50472600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr7:50465600-50473400	Strong transcription	Primary T cells from cord blood	blood
15	chr7:50465800-50472200	Strong transcription	Primary T helper naive cells from peripheral blood	blood
16	chr7:50466400-50474600	Weak transcription	K562	blood
17	chr7:50466600-50473600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr7:50467000-50477200	Weak transcription	Colonic Mucosa	Colon
19	chr7:50467600-50472200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr7:50467800-50471400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr7:50468000-50472200	Strong transcription	GM12878-XiMat	blood
22	chr7:50468200-50479800	Weak transcription	Gastric	stomach
23	chr7:50468600-50470600	Genic enhancers	Primary T helper cells PMA-I stimulated	--
24	chr7:50468600-50470800	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
25	chr7:50468800-50470600	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
26	chr7:50468800-50471200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr7:50469000-50470800	Genic enhancers	Primary T helper cells fromperipheralblood	blood
28	chr7:50469000-50472400	Genic enhancers	Primary B cells from peripheral blood	blood
29	chr7:50469000-50476800	Weak transcription	Duodenum Mucosa	Duodenum
30	chr7:50469000-50480600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr7:50469200-50470600	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr7:50469200-50470600	Genic enhancers	Primary T killer memory cells from peripheral blood	blood
33	chr7:50469200-50471000	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr7:50469800-50470400	Genic enhancers	Primary B cells from cord blood	blood
35	chr7:50469800-50472600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr7:50470200-50472400	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr7:50470200-50472800	Weak transcription	Spleen	Spleen

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links