Variant report
| Variant | rs11978828 |
|---|---|
| Chromosome Location | chr7:136811432-136811433 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10488605 | 0.83[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs11982570 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12707345 | 0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs1364716 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17168934 | 0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17168947 | 0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs17168990 | 0.84[MEX][hapmap];0.83[TSI][hapmap] |
| rs33914231 | 0.86[EUR][1000 genomes] |
| rs35119148 | 0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs35655262 | 0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs35695483 | 0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs35825323 | 0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs36110794 | 0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs36138744 | 0.84[EUR][1000 genomes] |
| rs4338046 | 1.00[CEU][hapmap];0.89[EUR][1000 genomes] |
| rs66483613 | 0.89[EUR][1000 genomes] |
| rs67751562 | 0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs73450814 | 0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73450817 | 0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7804134 | 0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1029192 | chr7:136433278-137147566 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 23 gene(s) | inside rSNPs | diseases |
| 2 | esv2753059 | chr7:136633745-136893745 | Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv1028902 | chr7:136727136-136858804 | Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 4 | nsv608462 | chr7:136746607-136839390 | Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 5 | esv2754488 | chr7:136798166-136817637 | Weak transcription Enhancers | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:136807200-136812000 | Weak transcription | IMR90 fetal lung fibroblasts Cell Line | lung |
