The 2.0 version of rSNPBase

Variant report

Variant rs11979078
Chromosome Location chr7:80469059-80469060
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:45 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr7:80425400-80480200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
2 chr7:80427400-80483800 Weak transcription Fetal Muscle Trunk muscle
3 chr7:80446400-80472000 Weak transcription Rectal Mucosa Donor 31 rectum
4 chr7:80454600-80481000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
5 chr7:80456600-80482600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
6 chr7:80457400-80469200 Weak transcription Fetal Lung lung
7 chr7:80458200-80474200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
8 chr7:80460200-80470200 Weak transcription Rectal Mucosa Donor 29 rectum
9 chr7:80460200-80471200 Weak transcription Stomach Smooth Muscle stomach
10 chr7:80460400-80471200 Weak transcription Adipose Nuclei Adipose
11 chr7:80460400-80514600 Weak transcription Left Ventricle heart
12 chr7:80460600-80470200 Weak transcription Fetal Stomach stomach
13 chr7:80460600-80474000 Weak transcription Fetal Muscle Leg muscle
14 chr7:80461800-80470600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
15 chr7:80463200-80471400 Weak transcription NHLF lung
16 chr7:80463600-80470200 Weak transcription Muscle Satellite Cultured Cells --
17 chr7:80463600-80470600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
18 chr7:80463600-80470800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
19 chr7:80463800-80470800 Weak transcription NHDF-Ad bronchial
20 chr7:80464000-80470200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
21 chr7:80464000-80475600 Weak transcription HSMMtube muscle
22 chr7:80464200-80470800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
23 chr7:80464400-80470200 Weak transcription Rectal Smooth Muscle rectum
24 chr7:80464400-80470600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
25 chr7:80464800-80470000 Genic enhancers Breast Myoepithelial Primary Cells Breast
26 chr7:80465400-80471200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
27 chr7:80466200-80469400 Genic enhancers A549 lung
28 chr7:80466800-80469400 Genic enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
29 chr7:80466800-80470800 Weak transcription NH-A brain
30 chr7:80467000-80469400 Enhancers Fetal Intestine Small intestine
31 chr7:80467200-80471200 Weak transcription Osteobl bone
32 chr7:80467800-80469200 Genic enhancers HMEC breast
33 chr7:80467800-80469400 Strong transcription HSMM muscle
34 chr7:80468000-80469600 Enhancers Fetal Intestine Large intestine
35 chr7:80468000-80474000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
36 chr7:80468200-80469400 Weak transcription Colon Smooth Muscle Colon
37 chr7:80468200-80471200 Weak transcription Primary monocytes fromperipheralblood blood
38 chr7:80468400-80469400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
39 chr7:80468400-80471200 Weak transcription Monocytes-CD14+_RO01746 blood
40 chr7:80468600-80469200 Genic enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
41 chr7:80468600-80469200 Enhancers Duodenum Mucosa Duodenum
42 chr7:80468600-80469200 Weak transcription Duodenum Smooth Muscle Duodenum
43 chr7:80468600-80476800 Weak transcription NHEK skin
44 chr7:80468800-80470800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
45 chr7:80468800-80474000 Weak transcription Psoas Muscle Psoas

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Last update: Aug 31, 2015