Variant report

Variant	rs11979465
Chromosome Location	chr7:18802118-18802119
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11980192	1.00[AMR][1000 genomes]
rs2588619	1.00[AMR][1000 genomes]
rs6955566	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755157	chr7:18337660-18805860	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv830917	chr7:18612436-18817712	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv531368	chr7:18677922-18836920	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv498112	chr7:18677922-18991946	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv887813	chr7:18720135-18995552	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv887814	chr7:18751998-18886177	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:18765200-18810600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:18787800-18810800	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr7:18789000-18807800	Weak transcription	Aorta	Aorta
4	chr7:18789000-18808600	Weak transcription	Left Ventricle	heart
5	chr7:18790600-18835000	Weak transcription	Primary B cells from cord blood	blood
6	chr7:18797800-18807800	Weak transcription	HSMMtube	muscle
7	chr7:18799800-18802200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr7:18800400-18802400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr7:18800400-18802400	Enhancers	NH-A	brain
10	chr7:18800800-18802400	Enhancers	NHDF-Ad	bronchial
11	chr7:18801600-18802200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr7:18801600-18802400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr7:18801600-18802400	Enhancers	Muscle Satellite Cultured Cells	--
14	chr7:18801600-18802400	Enhancers	HSMM	muscle
15	chr7:18801600-18802400	Enhancers	Osteobl	bone
16	chr7:18801800-18802400	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr7:18801800-18802400	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr7:18801800-18802600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr7:18802000-18802400	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr7:18802000-18803000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr7:18802000-18807400	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr7:18802000-18807800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr7:18802000-18809800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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