Variant report

Variant	rs11979747
Chromosome Location	chr7:50489675-50489676
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11575554	1.00[AMR][1000 genomes]
rs11575572	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11980990	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016665	chr7:50452552-51404524	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv515738	chr7:50476109-50494207	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:50485000-50490800	Weak transcription	Spleen	Spleen
2	chr7:50485400-50490400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr7:50486200-50513200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr7:50486400-50491600	Weak transcription	Primary B cells from peripheral blood	blood
5	chr7:50486600-50495000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr7:50486800-50491400	Weak transcription	Fetal Thymus	thymus
7	chr7:50488000-50489800	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr7:50488600-50489800	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr7:50489000-50489800	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr7:50489000-50490200	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr7:50489200-50490000	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr7:50489400-50491000	Enhancers	HUVEC	blood vessel

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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