Variant report

Variant	rs11980288
Chromosome Location	chr7:129170108-129170109
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831128	chr7:129063040-129240800	Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	esv3478069	chr7:129157163-129204221	Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	esv3478070	chr7:129157177-129204220	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	esv3407180	chr7:129170016-129174514	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129150800-129175400	Weak transcription	Right Atrium	heart
2	chr7:129162200-129172200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:129163000-129172000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:129165400-129170200	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr7:129165800-129172000	Weak transcription	Spleen	Spleen
6	chr7:129166800-129171600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr7:129167200-129171000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr7:129169400-129170200	Enhancers	Placenta Amnion	Placenta Amnion
9	chr7:129169400-129171800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr7:129169400-129174800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr7:129169600-129172000	Enhancers	HMEC	breast
12	chr7:129169600-129172600	Enhancers	Placenta	Placenta
13	chr7:129169800-129172000	Enhancers	NHEK	skin
14	chr7:129169800-129172200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr7:129170000-129170800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr7:129170000-129171200	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr7:129170000-129172000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr7:129170000-129172000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr7:129170000-129172400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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