Variant report

Variant	rs11981557
Chromosome Location	chr7:140217244-140217245
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:140217094..140218389-chr7:140352924..140354007,12	K562	blood:
2	chr7:140216203..140218694-chr7:140353097..140355919,3	MCF-7	breast:
3	chr7:140211069..140212654-chr7:140215627..140217284,2	MCF-7	breast:
4	chr7:140216375..140219201-chr7:140345522..140347108,2	MCF-7	breast:
5	chr7:140174812..140177161-chr7:140216236..140218009,2	K562	blood:
6	chr7:140217150..140218325-chr7:140711569..140712510,4	K562	blood:
7	chr7:140175647..140176450-chr7:140217181..140217731,2	K562	blood:
8	chr7:140175661..140178823-chr7:140215593..140219447,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000240173	Chromatin interaction
ENSG00000133606	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12112975	1.00[CHD][hapmap]
rs2072415	1.00[CHD][hapmap]
rs4466315	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464734	chr7:140108096-140217670	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv608500	chr7:140108096-140217670	Genic enhancers Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	esv1803443	chr7:140146694-140263109	Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv437576	chr7:140182985-140217670	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
5	esv2761112	chr7:140191538-140234571	Strong transcription Genic enhancers Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
6	nsv464735	chr7:140195463-140233585	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
7	nsv608501	chr7:140195463-140233585	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
8	nsv1033685	chr7:140197079-140224303	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
9	nsv1015856	chr7:140197079-140235677	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
10	nsv1018535	chr7:140198540-140224303	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers	Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
11	nsv1019815	chr7:140206590-140235677	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
12	nsv971147	chr7:140212384-140219526	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	esv1802929	chr7:140212566-140285491	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140205800-140225400	Weak transcription	Spleen	Spleen
2	chr7:140206800-140233200	Weak transcription	Brain Angular Gyrus	brain
3	chr7:140207000-140241000	Weak transcription	Fetal Brain Male	brain
4	chr7:140207200-140217400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:140207200-140217400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr7:140207200-140217400	Weak transcription	Fetal Lung	lung
7	chr7:140207200-140218000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr7:140207200-140218000	Weak transcription	NHLF	lung
9	chr7:140207200-140219200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr7:140207800-140218000	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr7:140208000-140218000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr7:140208600-140219200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr7:140209000-140217800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr7:140210800-140220000	Weak transcription	Brain Anterior Caudate	brain
15	chr7:140211600-140225600	Weak transcription	NH-A	brain
16	chr7:140212400-140217400	Weak transcription	Colonic Mucosa	Colon
17	chr7:140212600-140217400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr7:140212600-140217400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr7:140212600-140217600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr7:140212600-140217600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr7:140212600-140217600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr7:140212600-140217600	Weak transcription	Right Ventricle	heart
23	chr7:140212600-140217800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr7:140212600-140218000	Weak transcription	Duodenum Mucosa	Duodenum
25	chr7:140212600-140218000	Weak transcription	Rectal Smooth Muscle	rectum
26	chr7:140212600-140218600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr7:140212600-140220800	Weak transcription	Brain Hippocampus Middle	brain
28	chr7:140212600-140221200	Weak transcription	Left Ventricle	heart
29	chr7:140212600-140225400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr7:140212600-140225400	Weak transcription	Esophagus	oesophagus
31	chr7:140212600-140225800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr7:140212600-140225800	Weak transcription	Right Atrium	heart
33	chr7:140212600-140227000	Weak transcription	Lung	lung
34	chr7:140212800-140217600	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr7:140212800-140217600	Weak transcription	Pancreas	Pancrea
36	chr7:140212800-140217600	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr7:140212800-140217600	Weak transcription	Stomach Smooth Muscle	stomach
38	chr7:140212800-140217600	Weak transcription	A549	lung
39	chr7:140212800-140217600	Weak transcription	K562	blood
40	chr7:140212800-140217800	Weak transcription	Placenta	Placenta
41	chr7:140212800-140217800	Weak transcription	Stomach Mucosa	stomach
42	chr7:140212800-140218000	Weak transcription	Ovary	ovary
43	chr7:140212800-140218000	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr7:140212800-140218200	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr7:140212800-140224000	Weak transcription	Liver	Liver
46	chr7:140214200-140218800	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr7:140214600-140225400	Weak transcription	Gastric	stomach
48	chr7:140215000-140217800	Strong transcription	Fetal Stomach	stomach
49	chr7:140216400-140219000	Weak transcription	Brain Substantia Nigra	brain
50	chr7:140216600-140217400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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