Variant report

Variant	rs11981857
Chromosome Location	chr7:27887806-27887807
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:27887045..27889162-chr7:27891561..27893671,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10257676	0.82[ASN][1000 genomes]
rs11761905	0.82[ASN][1000 genomes]
rs11975008	0.83[AMR][1000 genomes]
rs11981911	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13238115	0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949025	chr7:27578167-28075172	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1028469	chr7:27767795-27939667	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv2758109	chr7:27793616-27972869	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	esv2759520	chr7:27793616-27972869	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv1018550	chr7:27844038-27925645	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv1030685	chr7:27844038-28177301	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11981857	HIBADH	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27870600-27891800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr7:27871400-27889600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:27872800-27890000	Weak transcription	Fetal Lung	lung
4	chr7:27874400-27888600	Weak transcription	Brain Angular Gyrus	brain
5	chr7:27875200-27913000	Weak transcription	Right Atrium	heart
6	chr7:27876200-27913000	Weak transcription	Fetal Heart	heart
7	chr7:27880000-27891600	Weak transcription	Osteobl	bone
8	chr7:27880400-27891000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr7:27880600-27889000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr7:27880600-27903000	Weak transcription	Lung	lung
11	chr7:27880600-27913600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr7:27880800-27895600	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr7:27880800-27896600	Weak transcription	Spleen	Spleen
14	chr7:27880800-27896800	Weak transcription	Gastric	stomach
15	chr7:27880800-27913200	Weak transcription	Aorta	Aorta
16	chr7:27881000-27905600	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr7:27881200-27895800	Weak transcription	Primary T cells from cord blood	blood
18	chr7:27881600-27895600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr7:27881800-27896600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr7:27882600-27895400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr7:27882800-27888800	Weak transcription	Brain Cingulate Gyrus	brain
22	chr7:27882800-27912000	Weak transcription	Brain Anterior Caudate	brain
23	chr7:27883600-27896000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr7:27883600-27903000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr7:27883800-27892000	Weak transcription	Fetal Stomach	stomach
26	chr7:27883800-27903000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr7:27884600-27895800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr7:27885200-27900400	Weak transcription	Monocytes-CD14+_RO01746	blood
29	chr7:27886400-27890000	Weak transcription	Primary B cells from peripheral blood	blood
30	chr7:27886400-27902000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr7:27887800-27888000	Strong transcription	Primary B cells from cord blood	blood

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