Variant report

Variant	rs11981869
Chromosome Location	chr7:25402032-25402033
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1002203	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1015497	0.89[EUR][1000 genomes]
rs10807824	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11764103	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11769627	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11972231	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12670448	1.00[ASN][1000 genomes]
rs12672062	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12700616	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12700617	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12700618	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12700619	0.90[EUR][1000 genomes]
rs12700620	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12700621	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12700623	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12700624	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12700625	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12700628	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13221394	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13310680	0.89[EUR][1000 genomes]
rs1988282	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1988283	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2188993	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4134095	0.81[EUR][1000 genomes]
rs6461862	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6461864	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6953741	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6964890	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7811651	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs929239	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs929240	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606424	chr7:24982529-25466521	Genic enhancers Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
2	nsv606426	chr7:25254125-25621579	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv887846	chr7:25371700-25407621	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25400000-25402200	Enhancers	Brain Germinal Matrix	brain
2	chr7:25400200-25409400	Weak transcription	Pancreas	Pancrea
3	chr7:25400600-25409200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr7:25401600-25402200	Weak transcription	Fetal Brain Female	brain

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