Variant report

Variant	rs11982726
Chromosome Location	chr7:99025632-99025633
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:99021211..99022744-chr7:99025529..99028020,2	MCF-7	breast:
2	chr7:99025112..99027290-chr7:99035346..99038143,2	K562	blood:
3	chr7:99024108..99026469-chr7:99034518..99036829,2	MCF-7	breast:
4	chr7:99025099..99027768-chr7:99034111..99036844,3	MCF-7	breast:
5	chr7:99020429..99023882-chr7:99024975..99028179,3	K562	blood:
6	chr7:99020471..99023882-chr7:99024975..99028185,3	K562	blood:

Variant related genes	Relation type
ENSG00000160917	Chromatin interaction
ENSG00000106246	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs11973173	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3433144	chr7:98777878-99060209	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv831069	chr7:98948128-99127584	Active TSS Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv888767	chr7:99017832-99050039	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
4	nsv888768	chr7:99017832-99052428	Active TSS Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
5	nsv888769	chr7:99018584-99041748	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	26 gene(s)	inside rSNPs	diseases
6	nsv888770	chr7:99021344-99041748	Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99007200-99035400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr7:99008000-99026600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:99011400-99035000	Weak transcription	Fetal Brain Male	brain
4	chr7:99011600-99032200	Weak transcription	NHDF-Ad	bronchial
5	chr7:99013200-99028800	Strong transcription	Fetal Intestine Small	intestine
6	chr7:99015600-99035200	Weak transcription	Fetal Kidney	kidney
7	chr7:99015600-99035400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr7:99015600-99035600	Weak transcription	Stomach Mucosa	stomach
9	chr7:99016800-99036000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr7:99017600-99030200	Weak transcription	Primary hematopoietic stem cells	blood
11	chr7:99017600-99035600	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr7:99017800-99027000	Weak transcription	HUVEC	blood vessel
13	chr7:99018200-99026800	Weak transcription	Psoas Muscle	Psoas
14	chr7:99018200-99035200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr7:99018200-99035400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr7:99018400-99026800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr7:99018400-99035600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr7:99019000-99027000	Weak transcription	Hela-S3	cervix
19	chr7:99020200-99030000	Weak transcription	HSMM	muscle
20	chr7:99021400-99034400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr7:99021600-99035200	Weak transcription	HMEC	breast
22	chr7:99022000-99026600	Weak transcription	Primary B cells from cord blood	blood
23	chr7:99022200-99035400	Weak transcription	NH-A	brain
24	chr7:99022400-99026800	Weak transcription	GM12878-XiMat	blood
25	chr7:99022600-99026800	Weak transcription	HepG2	liver
26	chr7:99022800-99026200	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr7:99022800-99026200	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr7:99023000-99026200	Weak transcription	Brain Anterior Caudate	brain
29	chr7:99023000-99026600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr7:99023000-99027000	Weak transcription	HSMMtube	muscle
31	chr7:99023000-99027800	Weak transcription	Osteobl	bone
32	chr7:99023000-99036000	Weak transcription	Small Intestine	intestine
33	chr7:99023200-99025800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr7:99023200-99025800	Weak transcription	NHEK	skin
35	chr7:99023200-99026200	Weak transcription	Colonic Mucosa	Colon
36	chr7:99023200-99026200	Weak transcription	Colon Smooth Muscle	Colon
37	chr7:99023200-99026200	Weak transcription	Duodenum Mucosa	Duodenum
38	chr7:99023200-99026400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr7:99023200-99026400	Weak transcription	Brain Cingulate Gyrus	brain
40	chr7:99023200-99026600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr7:99023200-99026600	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr7:99023400-99025800	Weak transcription	Primary T cells fromperipheralblood	blood
43	chr7:99023400-99026000	Weak transcription	Fetal Lung	lung
44	chr7:99023400-99026200	Weak transcription	Fetal Thymus	thymus
45	chr7:99023400-99026200	Weak transcription	Pancreas	Pancrea
46	chr7:99023400-99026200	Weak transcription	Rectal Smooth Muscle	rectum
47	chr7:99023400-99026400	Weak transcription	Left Ventricle	heart
48	chr7:99023400-99026400	Weak transcription	NHLF	lung
49	chr7:99023400-99026600	Weak transcription	Primary T helper cells PMA-I stimulated	--
50	chr7:99023400-99026600	Weak transcription	Primary T helper cells fromperipheralblood	blood

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