Variant report

Variant	rs11983498
Chromosome Location	chr7:16316422-16316423
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12112931	0.85[AMR][1000 genomes]
rs17169337	1.00[CEU][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17169339	1.00[CEU][hapmap]
rs17169341	1.00[CEU][hapmap];0.85[AMR][1000 genomes]
rs17169343	1.00[CEU][hapmap]
rs17169347	0.85[AMR][1000 genomes]
rs17169349	1.00[CEU][hapmap]
rs17169351	1.00[CEU][hapmap];0.90[JPT][hapmap];0.85[AMR][1000 genomes]
rs17169353	1.00[CEU][hapmap];0.81[JPT][hapmap];0.85[AMR][1000 genomes]
rs17169354	0.85[AMR][1000 genomes]
rs56926429	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59096069	0.85[AMR][1000 genomes]
rs59670548	0.85[AMR][1000 genomes]
rs60943478	0.85[AMR][1000 genomes]
rs61017342	0.85[AMR][1000 genomes]
rs61172485	0.85[AMR][1000 genomes]
rs6977264	0.85[AMR][1000 genomes]
rs73681799	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv948950	chr7:16168925-16395434	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	esv2757214	chr7:16236162-16334228	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	esv2759514	chr7:16236162-16527390	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	esv34298	chr7:16251754-16324185	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv1022388	chr7:16251992-16431864	Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv1022814	chr7:16262300-16339988	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	esv2758105	chr7:16272822-16527390	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16308800-16318000	Weak transcription	Left Ventricle	heart
2	chr7:16311400-16318000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr7:16311600-16319000	Weak transcription	Aorta	Aorta
4	chr7:16312400-16318000	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr7:16312400-16332800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr7:16313000-16318000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr7:16313400-16319000	Weak transcription	Ovary	ovary
8	chr7:16313600-16317400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr7:16313600-16318800	Weak transcription	Fetal Stomach	stomach
10	chr7:16313600-16319000	Weak transcription	Pancreas	Pancrea
11	chr7:16313600-16348200	Weak transcription	Gastric	stomach
12	chr7:16315800-16316600	Enhancers	Fetal Heart	heart
13	chr7:16316200-16316800	Enhancers	Stomach Mucosa	stomach
14	chr7:16316400-16319600	ZNF genes & repeats	K562	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links