Variant report

Variant	rs11984879
Chromosome Location	chr8:107070616-107070617
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:107055539..107058466-chr8:107069487..107071012,2	K562	blood:
2	chr8:107045005..107047534-chr8:107070265..107071984,2	K562	blood:
3	chr8:107046034..107047733-chr8:107070265..107072124,2	K562	blood:
4	chr8:107069077..107070630-chr8:107070667..107072859,2	K562	blood:

Variant related genes	Relation type
ENSG00000251003	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10093617	0.87[CEU][hapmap]
rs11986547	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11987081	0.89[CEU][hapmap]
rs11988220	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11991434	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11997204	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11998029	0.87[CEU][hapmap]
rs11998455	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11998458	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1603358	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57898845	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58777728	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59294314	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59553300	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59667866	0.90[EUR][1000 genomes]
rs59852201	1.00[ASN][1000 genomes]
rs60832121	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60875860	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61186960	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61476930	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6983179	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6983667	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6999985	0.90[EUR][1000 genomes]
rs7005320	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7007134	0.87[CEU][hapmap]
rs73295311	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73295315	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73295319	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73295387	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7815337	0.85[AFR][1000 genomes]
rs7826962	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7829029	0.93[EUR][1000 genomes]
rs7830351	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7830687	0.86[EUR][1000 genomes]
rs7831070	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7832603	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7833854	1.00[ASN][1000 genomes]
rs7839192	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7844249	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7846344	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs924102	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv611841	chr8:107048059-107090500	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107059200-107072000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr8:107060600-107070800	Weak transcription	A549	lung
3	chr8:107067400-107070800	Weak transcription	Hela-S3	cervix
4	chr8:107067600-107071200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr8:107067800-107071200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr8:107067800-107071800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr8:107068000-107071000	Weak transcription	NHDF-Ad	bronchial
8	chr8:107068000-107073600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr8:107068200-107070800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr8:107068200-107070800	Weak transcription	Osteobl	bone
11	chr8:107068200-107071600	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr8:107068200-107072000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr8:107068400-107070800	Weak transcription	Fetal Kidney	kidney
14	chr8:107069000-107070800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr8:107070000-107070800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr8:107070400-107070800	Enhancers	NH-A	brain
17	chr8:107070600-107070800	Active TSS	K562	blood
18	chr8:107070600-107070800	Enhancers	NHLF	lung

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