Variant report

Variant	rs11985102
Chromosome Location	chr8:105664741-105664742
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:105562549..105564973-chr8:105664722..105666393,2	K562	blood:
2	chr8:105656931..105660419-chr8:105661610..105665749,4	K562	blood:
3	chr8:105663459..105665636-chr8:105676493..105679331,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10429349	1.00[ASW][hapmap];1.00[GIH][hapmap];0.83[LWK][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11985107	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11985915	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11988545	1.00[AMR][1000 genomes]
rs11988673	1.00[AMR][1000 genomes]
rs11988817	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11990136	0.85[AFR][1000 genomes]
rs11992187	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11992473	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11993150	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11995366	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11996875	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11997098	1.00[AMR][1000 genomes]
rs11998493	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12114034	1.00[AMR][1000 genomes]
rs12114649	1.00[AMR][1000 genomes]
rs1438354	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28491098	1.00[AMR][1000 genomes]
rs35172462	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4562284	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016087	chr8:105228670-105934368	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1026754	chr8:105382508-106030916	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv539709	chr8:105382508-106030916	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	esv2422460	chr8:105573376-105746329	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1032476	chr8:105609904-106030916	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv539710	chr8:105609904-106030916	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:105661800-105666000	Weak transcription	K562	blood
2	chr8:105661800-105666800	Weak transcription	HSMM	muscle
3	chr8:105661800-105667000	Weak transcription	HSMMtube	muscle
4	chr8:105663600-105665400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr8:105664000-105665000	Weak transcription	Fetal Brain Male	brain
6	chr8:105664400-105664800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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