Variant report

Variant	rs11985367
Chromosome Location	chr18:10175210-10175211
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11984486	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11984610	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11985481	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11985562	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11989150	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11991332	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11994733	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11994812	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11995861	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11995891	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11997749	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11997783	0.83[AMR][1000 genomes]
rs11998063	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12114222	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12114345	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12114551	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12114562	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12115165	1.00[AFR][1000 genomes]
rs12115177	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1484605	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1503362	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6997223	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909368	chr18:10142323-10272979	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1059110	chr18:10142983-10596012	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:10169600-10182000	Weak transcription	Esophagus	oesophagus
2	chr18:10174800-10175800	Enhancers	Primary monocytes fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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